Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy6g1902 | ATGGGGAGGACTGATGATAATGTTGCTATAATTGGGGATTGGGTGCCTCCAAGTCCCAGCCCAAGAACCTTCTTCTCAGCAATGCTGGGGGAGGATGTTGGTTCTAGACCTGCAATGGATACTACCATCAGTGATAAAACTGAAGAGCTCTTTCTCAGGCCTCGAGAACATATGGTATCGGAAAACGCCCTTGCAAGAGGCGGGATCCCGGGCATCCATTCGAGTGACCGGTCGATGGATTTAGGTTCGTTCTCGGAGCAGAAATTCCGTGGAGGGCTTGTGGAAAGGATTGCAGCTAGAGCTGGATTCAATGCTCCAAGATTGAATACAGAGAGCATTAGATCCACATCCACAGATCACTCGTTGAATTCAGATGTCAAATCTCCTTACTTAACGATACCGCCTGGTCTCAGTCCAACTACATTGCTAGATTCGCCAGTTTTTCTTTCAAATTCTCTGGCTCAGCAATCTCCCACAACTGGAAAGTTCCCATTTTTGCCAAATGTTAGTAATCGGAGCTTGACGATGATGTCGGAGGCCAACAATAAAGGAAGCGACAACCCATTCAACGATAACAGTACATCATTTGCATTCAGACCCGGTGTGGAATCAGGATCGTCCTTTTTTCTCGGTGCAGCAAGCAAAGCAGCTTCTGCTACCATTCTTCCACAATCTTATCCAAGAATTGAGGTTCCAGCTCCACGTTCAGAAAATTCTTTTCAATCTCATCTAGTAGAACCATCTCTGTCTTTACCCCAAAATAGAATCAGTCATCATCCTCAAGTGGGACTCTCTACATCATGCGCGGAGAGGGACGATGGGGGAAAGACCGTGTCAGACGATCAAAGACCCTTTGATTCTCTGTGTGGAGGTGGTGAACATTCTTCACCATTGGACGAGCAACCGGACGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTGGTGGTTGCGGTGCTCCCTCGGAGGATGGATATAATTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGCGAGTATCCCCGGAGTTATTACAAGTGCACACATCCAAACTGTCAGGTCAAGAAGAAAGTCGAGCGATCTCACGAGGGCCATATAACAGAGATCATCTATAAAGGAGCACATAACCACCCAAAGCCCTCGCCAAACCGGCGAGCAGCAATTGGACCTTCTGATTCCCAACTCAATATGCAACTAGAAATCCCTGCACAAGCAGGCCAACAGAGTGCTGAAGGTCCTCTATGGGAAGATTCACAAAAAGGGATTCCAACTGGAGCTCCTGATTGGATGCATGACAACCTTGAGGTGACTTCTTCAGCATCCTTGGGTCCTGAATATGGCAATCAGCCTAACCCTTTACAGGCTCAAAATGGCAGTCATATTGAAACAGTTGAGGCCGTTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGAACACATGGCAGTATAACATTGGGGTATGAGGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTTGACGCTTATGTAACAGAAATGAGTGGTGCCACTAGAGCTATCCGCGAGCCTAGAGTTGTCGTCCAGACTACCAGTGAAGTGGATATTCTGGACGACGGCTATCGTTGGCGCAAATATGGACAGAAGGTTGTGAAAGGAAATCCAAATCCTAGGAGTTACTACAAGTGCACGAATCCCGGCTGCACGGTGAGGAAGCACGTCGAGCGGGCGTCGCATGACCTGAAGTCCGTGATCACCACGTATGAAGGAAAGCACAATCATGATGTTCCTGCTGCTCGCAATAGCAGCCACATCAGTTCTGGTACGTCCAGTCCAGTAACCGTGCAAAACTCGACCGCAGCAATTCAAAGTCATGTTCACAGACCAGGACCACCCCAGCCTCAGAACACCATTCCAAGATTTGAAAGGCCGCCCTTTGGCATTGCTGGAAGACAGCAGATGGGCACTGCCCATGCCTTCTCTTTTGGAATGAACCACCAGCCTGGACTGGGAAATTTGACAATGGCAGCAGTTGGCCAAGCCAAGCTTCCTGTTCTGCCAATGCATCCATACTTAGCACAAGCACACCATGTTAATGAAATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTGAACTTTTCCAATGGTTCAACCGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGCCCTGAGATGTGA | 2232 | 47.76 | MGRTDDNVAIIGDWVPPSPSPRTFFSAMLGEDVGSRPAMDTTISDKTEELFLRPREHMVSENALARGGIPGIHSSDRSMDLGSFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTSTDHSLNSDVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFLPNVSNRSLTMMSEANNKGSDNPFNDNSTSFAFRPGVESGSSFFLGAASKAASATILPQSYPRIEVPAPRSENSFQSHLVEPSLSLPQNRISHHPQVGLSTSCAERDDGGKTVSDDQRPFDSLCGGGEHSSPLDEQPDEGEQRGSGDSMAGGGCGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPNRRAAIGPSDSQLNMQLEIPAQAGQQSAEGPLWEDSQKGIPTGAPDWMHDNLEVTSSASLGPEYGNQPNPLQAQNGSHIETVEAVDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPVTVQNSTAAIQSHVHRPGPPQPQNTIPRFERPPFGIAGRQQMGTAHAFSFGMNHQPGLGNLTMAAVGQAKLPVLPMHPYLAQAHHVNEMGFLLPKGEPNVEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM | 743 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 39836153 | 39840290 | + | Maker00016086 | Lcy6g1902 | 636346 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy6g1902 | 743 | Gene3D | WRKY domain | 319 | 383 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy6g1902 | 743 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 185 | 618 | IPR044810 | GO:0003700(InterPro) | |
Lcy6g1902 | 743 | Gene3D | WRKY domain | 525 | 591 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy6g1902 | 743 | ProSiteProfiles | WRKY domain profile. | 324 | 382 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy6g1902 | 743 | FunFam | WRKY transcription factor 33 | 525 | 591 | - | - | |
Lcy6g1902 | 743 | MobiDBLite | consensus disorder prediction | 592 | 614 | - | - | |
Lcy6g1902 | 743 | SMART | WRKY_cls | 538 | 597 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy6g1902 | 743 | SMART | WRKY_cls | 323 | 381 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy6g1902 | 743 | MobiDBLite | consensus disorder prediction | 472 | 506 | - | - | |
Lcy6g1902 | 743 | SUPERFAMILY | WRKY DNA-binding domain | 530 | 598 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy6g1902 | 743 | MobiDBLite | consensus disorder prediction | 253 | 330 | - | - | |
Lcy6g1902 | 743 | Pfam | WRKY DNA -binding domain | 324 | 380 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy6g1902 | 743 | Pfam | WRKY DNA -binding domain | 539 | 596 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy6g1902 | 743 | MobiDBLite | consensus disorder prediction | 600 | 614 | - | - | |
Lcy6g1902 | 743 | SUPERFAMILY | WRKY DNA-binding domain | 322 | 382 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy6g1902 | 743 | FunFam | WRKY transcription factor | 314 | 383 | - | - | |
Lcy6g1902 | 743 | ProSiteProfiles | WRKY domain profile. | 533 | 598 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy4g0364 | Lcy-Chr4:4589451 | Lcy6g1902 | Lcy-Chr6:39836153 | 4.21E-67 | dispersed | |
Lcy5g0252 | Lcy-Chr5:2378355 | Lcy6g1902 | Lcy-Chr6:39836153 | 1.76E-59 | dispersed | |
Lcy6g1706 | Lcy-Chr6:32737111 | Lcy6g1902 | Lcy-Chr6:39836153 | 1.07E-91 | dispersed | |
Lcy6g1902 | Lcy-Chr6:39836153 | Lcy7g0314 | Lcy-Chr7:2684309 | 2.50E-80 | dispersed | |
Lcy11g0042 | Lcy-Chr11:418245 | Lcy6g1902 | Lcy-Chr6:39836153 | 1.93E-76 | transposed | |
Lcy2g1456 | Lcy-Chr2:18039992 | Lcy6g1902 | Lcy-Chr6:39836153 | 8.97E-104 | transposed | |
Lcy6g1902 | Lcy-Chr6:39836153 | Lcy8g0340 | Lcy-Chr8:10382139 | 1.79E-09 | wgd | |
Lcy6g1902 | Lcy-Chr6:39836153 | Lcy8g0308 | Lcy-Chr8:9337545 | 3.32E-26 | wgd | |
Lcy6g1902 | Lcy-Chr6:39836153 | Lcy8g0779 | Lcy-Chr8:28527740 | 2.09E-22 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20323 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy6g1902 | K18835 | - | csv:101207853 | 1282.7 |