Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1902 ATGGGGAGGACTGATGATAATGTTGCTATAATTGGGGATTGGGTGCCTCCAAGTCCCAGCCCAAGAACCTTCTTCTCAGCAATGCTGGGGGAGGATGTTGGTTCTAGACCTGCAATGGATACTACCATCAGTGATAAAACTGAAGAGCTCTTTCTCAGGCCTCGAGAACATATGGTATCGGAAAACGCCCTTGCAAGAGGCGGGATCCCGGGCATCCATTCGAGTGACCGGTCGATGGATTTAGGTTCGTTCTCGGAGCAGAAATTCCGTGGAGGGCTTGTGGAAAGGATTGCAGCTAGAGCTGGATTCAATGCTCCAAGATTGAATACAGAGAGCATTAGATCCACATCCACAGATCACTCGTTGAATTCAGATGTCAAATCTCCTTACTTAACGATACCGCCTGGTCTCAGTCCAACTACATTGCTAGATTCGCCAGTTTTTCTTTCAAATTCTCTGGCTCAGCAATCTCCCACAACTGGAAAGTTCCCATTTTTGCCAAATGTTAGTAATCGGAGCTTGACGATGATGTCGGAGGCCAACAATAAAGGAAGCGACAACCCATTCAACGATAACAGTACATCATTTGCATTCAGACCCGGTGTGGAATCAGGATCGTCCTTTTTTCTCGGTGCAGCAAGCAAAGCAGCTTCTGCTACCATTCTTCCACAATCTTATCCAAGAATTGAGGTTCCAGCTCCACGTTCAGAAAATTCTTTTCAATCTCATCTAGTAGAACCATCTCTGTCTTTACCCCAAAATAGAATCAGTCATCATCCTCAAGTGGGACTCTCTACATCATGCGCGGAGAGGGACGATGGGGGAAAGACCGTGTCAGACGATCAAAGACCCTTTGATTCTCTGTGTGGAGGTGGTGAACATTCTTCACCATTGGACGAGCAACCGGACGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTGGTGGTTGCGGTGCTCCCTCGGAGGATGGATATAATTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGCGAGTATCCCCGGAGTTATTACAAGTGCACACATCCAAACTGTCAGGTCAAGAAGAAAGTCGAGCGATCTCACGAGGGCCATATAACAGAGATCATCTATAAAGGAGCACATAACCACCCAAAGCCCTCGCCAAACCGGCGAGCAGCAATTGGACCTTCTGATTCCCAACTCAATATGCAACTAGAAATCCCTGCACAAGCAGGCCAACAGAGTGCTGAAGGTCCTCTATGGGAAGATTCACAAAAAGGGATTCCAACTGGAGCTCCTGATTGGATGCATGACAACCTTGAGGTGACTTCTTCAGCATCCTTGGGTCCTGAATATGGCAATCAGCCTAACCCTTTACAGGCTCAAAATGGCAGTCATATTGAAACAGTTGAGGCCGTTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGAACACATGGCAGTATAACATTGGGGTATGAGGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTTGACGCTTATGTAACAGAAATGAGTGGTGCCACTAGAGCTATCCGCGAGCCTAGAGTTGTCGTCCAGACTACCAGTGAAGTGGATATTCTGGACGACGGCTATCGTTGGCGCAAATATGGACAGAAGGTTGTGAAAGGAAATCCAAATCCTAGGAGTTACTACAAGTGCACGAATCCCGGCTGCACGGTGAGGAAGCACGTCGAGCGGGCGTCGCATGACCTGAAGTCCGTGATCACCACGTATGAAGGAAAGCACAATCATGATGTTCCTGCTGCTCGCAATAGCAGCCACATCAGTTCTGGTACGTCCAGTCCAGTAACCGTGCAAAACTCGACCGCAGCAATTCAAAGTCATGTTCACAGACCAGGACCACCCCAGCCTCAGAACACCATTCCAAGATTTGAAAGGCCGCCCTTTGGCATTGCTGGAAGACAGCAGATGGGCACTGCCCATGCCTTCTCTTTTGGAATGAACCACCAGCCTGGACTGGGAAATTTGACAATGGCAGCAGTTGGCCAAGCCAAGCTTCCTGTTCTGCCAATGCATCCATACTTAGCACAAGCACACCATGTTAATGAAATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTGAACTTTTCCAATGGTTCAACCGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGCCCTGAGATGTGA 2232 47.76 MGRTDDNVAIIGDWVPPSPSPRTFFSAMLGEDVGSRPAMDTTISDKTEELFLRPREHMVSENALARGGIPGIHSSDRSMDLGSFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTSTDHSLNSDVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFLPNVSNRSLTMMSEANNKGSDNPFNDNSTSFAFRPGVESGSSFFLGAASKAASATILPQSYPRIEVPAPRSENSFQSHLVEPSLSLPQNRISHHPQVGLSTSCAERDDGGKTVSDDQRPFDSLCGGGEHSSPLDEQPDEGEQRGSGDSMAGGGCGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPNRRAAIGPSDSQLNMQLEIPAQAGQQSAEGPLWEDSQKGIPTGAPDWMHDNLEVTSSASLGPEYGNQPNPLQAQNGSHIETVEAVDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPVTVQNSTAAIQSHVHRPGPPQPQNTIPRFERPPFGIAGRQQMGTAHAFSFGMNHQPGLGNLTMAAVGQAKLPVLPMHPYLAQAHHVNEMGFLLPKGEPNVEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39836153 39840290 + Maker00016086 Lcy6g1902 636346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1902 743 Gene3D WRKY domain 319 383 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1902 743 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 185 618 IPR044810 GO:0003700(InterPro)
Lcy6g1902 743 Gene3D WRKY domain 525 591 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1902 743 ProSiteProfiles WRKY domain profile. 324 382 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1902 743 FunFam WRKY transcription factor 33 525 591 - -
Lcy6g1902 743 MobiDBLite consensus disorder prediction 592 614 - -
Lcy6g1902 743 SMART WRKY_cls 538 597 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1902 743 SMART WRKY_cls 323 381 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1902 743 MobiDBLite consensus disorder prediction 472 506 - -
Lcy6g1902 743 SUPERFAMILY WRKY DNA-binding domain 530 598 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1902 743 MobiDBLite consensus disorder prediction 253 330 - -
Lcy6g1902 743 Pfam WRKY DNA -binding domain 324 380 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1902 743 Pfam WRKY DNA -binding domain 539 596 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1902 743 MobiDBLite consensus disorder prediction 600 614 - -
Lcy6g1902 743 SUPERFAMILY WRKY DNA-binding domain 322 382 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1902 743 FunFam WRKY transcription factor 314 383 - -
Lcy6g1902 743 ProSiteProfiles WRKY domain profile. 533 598 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0364 Lcy-Chr4:4589451 Lcy6g1902 Lcy-Chr6:39836153 4.21E-67 dispersed
Lcy5g0252 Lcy-Chr5:2378355 Lcy6g1902 Lcy-Chr6:39836153 1.76E-59 dispersed
Lcy6g1706 Lcy-Chr6:32737111 Lcy6g1902 Lcy-Chr6:39836153 1.07E-91 dispersed
Lcy6g1902 Lcy-Chr6:39836153 Lcy7g0314 Lcy-Chr7:2684309 2.50E-80 dispersed
Lcy11g0042 Lcy-Chr11:418245 Lcy6g1902 Lcy-Chr6:39836153 1.93E-76 transposed
Lcy2g1456 Lcy-Chr2:18039992 Lcy6g1902 Lcy-Chr6:39836153 8.97E-104 transposed
Lcy6g1902 Lcy-Chr6:39836153 Lcy8g0340 Lcy-Chr8:10382139 1.79E-09 wgd
Lcy6g1902 Lcy-Chr6:39836153 Lcy8g0308 Lcy-Chr8:9337545 3.32E-26 wgd
Lcy6g1902 Lcy-Chr6:39836153 Lcy8g0779 Lcy-Chr8:28527740 2.09E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20323 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1902 K18835 - csv:101207853 1282.7