Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1927 ATGGCATCCAGCTCCTCCAAGAAACATGATCACTACAAGGGAATCCGCTGCCGGAGCGGCAAATGGGTGTCGGAGATTCGGGAGCCACGCAAAACTACCCGAATATGGCTCGGGACGTACCCGACGCCCGAGATGGCCGCCGCTGCCTATGATGTCGCCGCTCTCGCCCTCAAGGGTTGCAATGCTGTTCTCAACTTCCCTGACTCAGTTGGGTCCTACCCGGTTCCGGCTTCCATGTCTCCGGCCGATATCCGTGTCGCTGCCGCTGCTGCCGCAGCTTCTAAAAGGGTTGATCACCAAGGAGAAAGAAATTACCTTAGCCATCACCAGTCTCCACCATCGGACGAGTTTGTCGATGAAGAGGCGCTTTTTGGAATGCCGAATCTTCTGGTCGACATGGCGGAGGGAATGCTGTTGTCGCCGCCGCGAATGAGCTCGTCGCCGTCACGACAGGACTACTACTCGTGGAACTCCGGTGGAGATGAAAATCTATGGAGCTACCAGTAG 507 56.61 MASSSSKKHDHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPDSVGSYPVPASMSPADIRVAAAAAAASKRVDHQGERNYLSHHQSPPSDEFVDEEALFGMPNLLVDMAEGMLLSPPRMSSSPSRQDYYSWNSGGDENLWSYQ 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40315238 40315744 + Maker00015895 Lcy6g1927 636371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1927 168 CDD AP2 11 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1927 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 131 IPR051032 -
Lcy6g1927 168 MobiDBLite consensus disorder prediction 141 168 - -
Lcy6g1927 168 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1927 168 MobiDBLite consensus disorder prediction 142 168 - -
Lcy6g1927 168 Pfam AP2 domain 11 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1927 168 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677(InterPro)
Lcy6g1927 168 SMART rav1_2 11 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1927 168 Gene3D AP2/ERF domain 10 68 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1927 168 FunFam Ethylene-responsive transcription factor 2 10 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1703 Lcy-Chr12:37515528 Lcy6g1927 Lcy-Chr6:40315238 3.82E-57 dispersed
Lcy5g0380 Lcy-Chr5:3849488 Lcy6g1927 Lcy-Chr6:40315238 4.07E-45 dispersed
Lcy6g0194 Lcy-Chr6:1772564 Lcy6g1927 Lcy-Chr6:40315238 2.61E-56 dispersed
Lcy6g0195 Lcy-Chr6:1783972 Lcy6g1927 Lcy-Chr6:40315238 9.87E-40 dispersed
Lcy6g1927 Lcy-Chr6:40315238 Lcy9g1625 Lcy-Chr9:41392249 3.52E-31 dispersed
Lcy12g1080 Lcy-Chr12:19290110 Lcy6g1927 Lcy-Chr6:40315238 1.04E-38 wgd
Lcy6g1927 Lcy-Chr6:40315238 Lcy8g0773 Lcy-Chr8:28362107 1.97E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20325 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1927 - - - 0.0