Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1957 ATGCCTTCGTTGGTGGGGCCGTTCTGTTGCATTCTATGCCGGAGGGCGGAGGAAGGCCGGGATCATATTTTGTGGAGTTGTGCCTTTGCTCGCTCAATATGGAGTTTGTTCTTTGACGCTTTTGGATTGCAGGGTAGGAGCTTCAGATGTACCAGGGAGATGATTGAGGAGTTCCTCCTCCATCCGCCATTCAGAGATAAGGGGAGGGAGTTATGTCTTGCCGAGGATTCGGTTTCGAAGGCCTTTTGTAACTATTCGATAGGTGTTATTATCTTTGATTGGAGCCCCTTCCTTTTGTGGGGTTCCCTTTTGATCATTGCTGGAGTTCTCAGCATTTTGAGTTTTCTTTCCCTAGATTCTCTGAAGTCTGAATTGTGCATTTTCGAGGATGCTCAGGGTCAGAACCTTGTGCTTGGAAATGTTGGCGACTCAAGAGCGGTGCTGGCTACAAGAGACGAAGATAACTCTTTGATTCCGGTTCAATTAACCGTGGACTTGAAACCTGACCTTCCTGGTGAAGCTGCTAGGATCCAGCAATGCAAAGGAAGGGTCTTTGCTTTGCAGGATGAGCCCGAAGTTGCACGAGTATGGTTGCCTAATAACGATTCACCTGGCTTGGCAATGGCAAGAGCTTTTGGAGACTTTTGTCTAAAGGATTTTGGTCTAATTTCCGTTCCCGATGTATACTATCGTCACCTTACTGCGAGAGATCAGTTTGTAAGTCCCCAGAATATCGATTTCCTTGGCGTCAAGCTAATAGATGTTTCATTAGACTCTAATGAGATTGTACCTGTCTGCGACTCGATTGACGAGAAAGTTGCAGCTGGAGGTCGAAATCCATCGAAGAGAAGCTTAGCTGAGTTCATTTCAAATGAAGAGGAGGAATGGTCTGCATTGGAGGGTATTACCAGAGTGAATAGTCTGCTAAGCCTTCCAAGGTTCCTATCTGGTGACAAAAGATCAAGCAGTTGGAGGAAATGGCTATGA 987 46.2 MPSLVGPFCCILCRRAEEGRDHILWSCAFARSIWSLFFDAFGLQGRSFRCTREMIEEFLLHPPFRDKGRELCLAEDSVSKAFCNYSIGVIIFDWSPFLLWGSLLIIAGVLSILSFLSLDSLKSELCIFEDAQGQNLVLGNVGDSRAVLATRDEDNSLIPVQLTVDLKPDLPGEAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDVYYRHLTARDQFVSPQNIDFLGVKLIDVSLDSNEIVPVCDSIDEKVAAGGRNPSKRSLAEFISNEEEEWSALEGITRVNSLLSLPRFLSGDKRSSSWRKWL 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41474195 41478636 + Maker00015863 Lcy6g1957 636401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1957 328 SMART PP2C_4 39 274 IPR001932 -
Lcy6g1957 328 SUPERFAMILY PP2C-like 132 239 IPR036457 -
Lcy6g1957 328 CDD PP2Cc 132 278 IPR001932 -
Lcy6g1957 328 ProSiteProfiles PPM-type phosphatase domain profile. 1 328 IPR001932 -
Lcy6g1957 328 Pfam Protein phosphatase 2C 132 240 IPR001932 -
Lcy6g1957 328 Gene3D - 119 245 IPR036457 -
Lcy6g1957 328 PANTHER PROTEIN PHOSPHATASE 132 240 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1957 Lcy-Chr6:41474195 Lcy8g1522 Lcy-Chr8:41844103 7.75E-48 dispersed
Lcy1g2106 Lcy-Chr1:28767660 Lcy6g1957 Lcy-Chr6:41474195 2.06E-31 wgd
Lcy10g0291 Lcy-Chr10:5079115 Lcy6g1957 Lcy-Chr6:41474195 2.11E-28 wgd
Lcy2g1901 Lcy-Chr2:34074312 Lcy6g1957 Lcy-Chr6:41474195 3.90E-27 wgd
Lcy3g0424 Lcy-Chr3:14143139 Lcy6g1957 Lcy-Chr6:41474195 1.17E-27 wgd
Lcy6g1957 Lcy-Chr6:41474195 Lcy8g0478 Lcy-Chr8:15576720 3.27E-29 wgd
Lcy6g1957 Lcy-Chr6:41474195 Lcy8g0351 Lcy-Chr8:10714933 4.89E-33 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1957 - - - 0.0