Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy6g1968 | ATGTCTGGAAGAAGTTGGAGAAATCCCAAATGTAATGGAAAACTTCCACCAGGTTCAATGGGATTTCCTCTACTTGGTGAAACCCTGCAGTTCTTTGCTCCCAATACCTCCTCTGATGTTCCTCCTTTCATCAGAAAGAGAGTGGATAGGTATGGACCGATATTCAGAACAAGTTTGGTGGGAAGACCGCTGATCGTCTCAACAGACCCCGACTTGAGTTACTTTATCTTTCAACAAGAGGGACAATTGTTCCAAAGCTGGTATCCAGATACCTTCACAGAGATATTTGGAAAACAAAATGTTGGTTCGTTGCACGGTTTCATTTATAAATATCTGAAGAACATGGTTCTTCATCTTTTTGGCCCTGAAAGTCTGAGAAAGATGATACCTGAAGTTGAGGCTGTAGCAACCAGAAGATTGAGACAATGGTCATCTAATGACTCAGTTGAATTGAAGGATAACACTGCAAGTATGATTTTTGATTTGACTGCAAAGAAGCTGATTAGTTATGATTCAGAAAATTCTTCGGAAAATTTGAGAGAGAACTTTGTTGCATTCATACAAGGCTTGATTTCCTTCCCTCTAAATGTTCCCGGAACTGCTTACAACAAATGCTTACAGGGCAGGAAAAGAGCAATGAGGATGCTGAAAAACATGTTACAAGACAGGCGGGCAAATCCAAGGAAACAGCAAATAGATTTTTACGATTTTGTTCTCGAAGAACTGCAGAAAGATGGAACTCTTCTCACTGAGGAAATTGCTTTGGACCTTATGTTTGTACTACTTTTCGCGAGCTTTGAAACTACTTCACTTGCTATTACTGCAGCCATTAAATTTCTCCTCAACAATCCTCATGTGCTGGAGGAGCTGACGGCTGAACATGAGGAAATATTGAAGAGAAGGGAAAATTCAGATTCTGGGCTTACATGGGGAGAATACAAATCCATGACATTCACATTTCAGTTCATCAATGAAACTGTGAGATTGGCAAATATAGTTCCGGGAATCTTTCGAAAAGCGCTGAGAGATATCCAGTTTAAGGGATATACCATTCCAGCAGGGTGGGCTGTTATGGTCTGCCCTCCGGCCGTGCACTTAAATCCAGAAAAGTACGTCGATCCCCTCACTTTTAACCCATGGCGATGGGAGAAATCTGAACTGAATGGAGCATCTAAACATTTCATGGCTTTCGGTGGGGGTATGAGGTTCTGTGTTGGTACAGATTTTACCAAAGTGCAAATGGCTGTGTTTCTCCATTGCCTGGTTACAAAGTACAAGTTCAAGGCAATCAAAGGAGGCAATATCGTCCGAACGCCCGGTTTACAGTTTCCCGACGGGTTCCACGTTCAGATCATGGAGAAATAG | 1365 | 41.98 | MSGRSWRNPKCNGKLPPGSMGFPLLGETLQFFAPNTSSDVPPFIRKRVDRYGPIFRTSLVGRPLIVSTDPDLSYFIFQQEGQLFQSWYPDTFTEIFGKQNVGSLHGFIYKYLKNMVLHLFGPESLRKMIPEVEAVATRRLRQWSSNDSVELKDNTASMIFDLTAKKLISYDSENSSENLRENFVAFIQGLISFPLNVPGTAYNKCLQGRKRAMRMLKNMLQDRRANPRKQQIDFYDFVLEELQKDGTLLTEEIALDLMFVLLFASFETTSLAITAAIKFLLNNPHVLEELTAEHEEILKRRENSDSGLTWGEYKSMTFTFQFINETVRLANIVPGIFRKALRDIQFKGYTIPAGWAVMVCPPAVHLNPEKYVDPLTFNPWRWEKSELNGASKHFMAFGGGMRFCVGTDFTKVQMAVFLHCLVTKYKFKAIKGGNIVRTPGLQFPDGFHVQIMEK | 454 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 41800985 | 41805431 | + | Maker00016019 | Lcy6g1968 | 636412 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy6g1968 | 454 | FunFam | Cytochrome P450 family protein | 7 | 453 | - | - | |
| Lcy6g1968 | 454 | PRINTS | E-class P450 group I signature | 394 | 404 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1968 | 454 | PRINTS | E-class P450 group I signature | 360 | 384 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1968 | 454 | PRINTS | E-class P450 group I signature | 320 | 338 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1968 | 454 | PRINTS | E-class P450 group I signature | 253 | 270 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1968 | 454 | PRINTS | E-class P450 group I signature | 404 | 427 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1968 | 454 | PRINTS | E-class P450 group I signature | 273 | 299 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1968 | 454 | PRINTS | E-class P450 group I signature | 48 | 67 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1968 | 454 | PANTHER | CYTOCHROME P450 26 | 14 | 425 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER) | |
| Lcy6g1968 | 454 | PRINTS | P450 superfamily signature | 321 | 332 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1968 | 454 | PRINTS | P450 superfamily signature | 264 | 281 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1968 | 454 | PRINTS | P450 superfamily signature | 404 | 415 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1968 | 454 | PRINTS | P450 superfamily signature | 395 | 404 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1968 | 454 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 397 | 406 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy6g1968 | 454 | Pfam | Cytochrome P450 | 16 | 437 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1968 | 454 | CDD | CYP90-like | 47 | 451 | - | - | |
| Lcy6g1968 | 454 | Gene3D | Cytochrome P450 | 7 | 453 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1968 | 454 | SUPERFAMILY | Cytochrome P450 | 12 | 450 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g2074 | Lcy-Chr10:44811943 | Lcy6g1968 | Lcy-Chr6:41800985 | 3.19E-65 | dispersed | |
| Lcy11g0892 | Lcy-Chr11:26604266 | Lcy6g1968 | Lcy-Chr6:41800985 | 1.75E-44 | dispersed | |
| Lcy11g0893 | Lcy-Chr11:26613718 | Lcy6g1968 | Lcy-Chr6:41800985 | 1.11E-69 | dispersed | |
| Lcy3g1458 | Lcy-Chr3:41354181 | Lcy6g1968 | Lcy-Chr6:41800985 | 2.50E-158 | dispersed | |
| Lcy5g2301 | Lcy-Chr5:45958805 | Lcy6g1968 | Lcy-Chr6:41800985 | 3.59E-57 | dispersed | |
| Lcy6g0960 | Lcy-Chr6:9974545 | Lcy6g1968 | Lcy-Chr6:41800985 | 9.76E-91 | dispersed | |
| Lcy6g1968 | Lcy-Chr6:41800985 | Lcy9g2109 | Lcy-Chr9:45787319 | 1.39E-67 | dispersed | |
| Lcy6g1968 | Lcy-Chr6:41800985 | Lcy7g0979 | Lcy-Chr7:10142468 | 6.83E-89 | transposed |
Pathway information