Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy6g1987 | ATGGCGTCTTCTTCTTCAGGCAGCTGCAGCAGCTATGACATGCCATGGGTGGAGAAGTACAGGCCCATCAAGGTCGCTGACATTGTGGGGAATGAAGATGCAGTTTCCCGGCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGGTCCGCCAGGAACTGGGAAGACAACCAGTATTTTGGCTCTTGCTCACGAGCTCTTGGGACCGAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGACGTTGTGAGGAACAAAATCAAGATGTTTGCCCAAAAGAAAGTAACATTACCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACTACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATCGAGCCTATCCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGTCGCCTCATGGTGGTGCTCCAAGCAGAAAAGCTTATCGATGATAGCCAACGATTGGAAGGCCCTTATGAGATAGAGTTTGAGCAGGGGCTTCCTCATCCCCTGGCCCCTGGGCTGAATGGTGCGGCTCTTTTCCAAGTACCCTATGTTCCAGAAGGCCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCTTTGAATAATCTGCAAGCTACATATAGTGGATTCCGCTTTGTAAACCAAGACAATGTTTTCAAGGTTTGCGATCAACCTCATCCGCTGCATGTGAAGAATGTGGTGCGCAATGTGCTTGGAGGTAAATTTGATGATGCTTGTGCAGGTTTGAAGCAACTTTATGACTTGGGCTATTCTCCCACCGACATAATAACCACTCTTTTCAGAATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACCGGGTTTGCCCATATGAGAATCTGTGATGGAGTTGGTTCTTACCTTCAGCTATGCGGTCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCCAAAGCACCATGA | 1104 | 45.83 | MASSSSGSCSSYDMPWVEKYRPIKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAEKLIDDSQRLEGPYEIEFEQGLPHPLAPGLNGAALFQVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLGGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP | 367 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 42308752 | 42315103 | + | Maker00015854 | Lcy6g1987 | 636431 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy6g1987 | 367 | Gene3D | - | 223 | 270 | - | - | |
Lcy6g1987 | 367 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 270 | 361 | IPR008921 | GO:0003677(InterPro)|GO:0006260(InterPro) | |
Lcy6g1987 | 367 | Pfam | ATPase family associated with various cellular activities (AAA) | 50 | 168 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Lcy6g1987 | 367 | CDD | AAA | 29 | 166 | - | - | |
Lcy6g1987 | 367 | Gene3D | - | 271 | 363 | - | - | |
Lcy6g1987 | 367 | FunFam | replication factor C subunit 2 | 271 | 363 | - | - | |
Lcy6g1987 | 367 | Gene3D | - | 8 | 171 | IPR027417 | - | |
Lcy6g1987 | 367 | CDD | HLD_clamp_RFC | 224 | 268 | IPR047854 | - | |
Lcy6g1987 | 367 | FunFam | Replication factor C subunit 4 | 222 | 270 | - | - | |
Lcy6g1987 | 367 | Pfam | Replication factor C C-terminal domain | 271 | 356 | IPR013748 | - | |
Lcy6g1987 | 367 | SMART | AAA_5 | 46 | 208 | IPR003593 | GO:0016887(InterPro) | |
Lcy6g1987 | 367 | FunFam | Replication factor C subunit 4 | 8 | 171 | - | - | |
Lcy6g1987 | 367 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 14 | 360 | IPR050238 | GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER) | |
Lcy6g1987 | 367 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 12 | 269 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g1238 | Lcy-Chr10:35055785 | Lcy6g1987 | Lcy-Chr6:42308752 | 4.21E-59 | dispersed | |
Lcy6g1987 | Lcy-Chr6:42308752 | Lcy9g1544 | Lcy-Chr9:40542873 | 2.03E-51 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy6g1987 | K10755 | - | csv:101208984 | 617.461 |