Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1987 ATGGCGTCTTCTTCTTCAGGCAGCTGCAGCAGCTATGACATGCCATGGGTGGAGAAGTACAGGCCCATCAAGGTCGCTGACATTGTGGGGAATGAAGATGCAGTTTCCCGGCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGGTCCGCCAGGAACTGGGAAGACAACCAGTATTTTGGCTCTTGCTCACGAGCTCTTGGGACCGAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGACGTTGTGAGGAACAAAATCAAGATGTTTGCCCAAAAGAAAGTAACATTACCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACTACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATCGAGCCTATCCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGTCGCCTCATGGTGGTGCTCCAAGCAGAAAAGCTTATCGATGATAGCCAACGATTGGAAGGCCCTTATGAGATAGAGTTTGAGCAGGGGCTTCCTCATCCCCTGGCCCCTGGGCTGAATGGTGCGGCTCTTTTCCAAGTACCCTATGTTCCAGAAGGCCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCTTTGAATAATCTGCAAGCTACATATAGTGGATTCCGCTTTGTAAACCAAGACAATGTTTTCAAGGTTTGCGATCAACCTCATCCGCTGCATGTGAAGAATGTGGTGCGCAATGTGCTTGGAGGTAAATTTGATGATGCTTGTGCAGGTTTGAAGCAACTTTATGACTTGGGCTATTCTCCCACCGACATAATAACCACTCTTTTCAGAATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACCGGGTTTGCCCATATGAGAATCTGTGATGGAGTTGGTTCTTACCTTCAGCTATGCGGTCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCCAAAGCACCATGA 1104 45.83 MASSSSGSCSSYDMPWVEKYRPIKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAEKLIDDSQRLEGPYEIEFEQGLPHPLAPGLNGAALFQVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLGGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42308752 42315103 + Maker00015854 Lcy6g1987 636431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1987 367 Gene3D - 223 270 - -
Lcy6g1987 367 SUPERFAMILY post-AAA+ oligomerization domain-like 270 361 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Lcy6g1987 367 Pfam ATPase family associated with various cellular activities (AAA) 50 168 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy6g1987 367 CDD AAA 29 166 - -
Lcy6g1987 367 Gene3D - 271 363 - -
Lcy6g1987 367 FunFam replication factor C subunit 2 271 363 - -
Lcy6g1987 367 Gene3D - 8 171 IPR027417 -
Lcy6g1987 367 CDD HLD_clamp_RFC 224 268 IPR047854 -
Lcy6g1987 367 FunFam Replication factor C subunit 4 222 270 - -
Lcy6g1987 367 Pfam Replication factor C C-terminal domain 271 356 IPR013748 -
Lcy6g1987 367 SMART AAA_5 46 208 IPR003593 GO:0016887(InterPro)
Lcy6g1987 367 FunFam Replication factor C subunit 4 8 171 - -
Lcy6g1987 367 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 14 360 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Lcy6g1987 367 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 269 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1238 Lcy-Chr10:35055785 Lcy6g1987 Lcy-Chr6:42308752 4.21E-59 dispersed
Lcy6g1987 Lcy-Chr6:42308752 Lcy9g1544 Lcy-Chr9:40542873 2.03E-51 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1987 K10755 - csv:101208984 617.461