Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1993 ATGCTAAGAAGAAGCAAGACCTTGAAAGGTAGGGTTGGCTGTCGAGATCAATGCGAGAAGTCCCTTGAGAATGAAAATCCACGATCTTTGGAGATTTGGCACGAGATATTTGATTTTCAGAAGATTCTGCGCAAATCCCGCGAATCTCGGAATTTGTTGGAAAGCCCAGTTGCGGCCGCAAATGGGGCGCAAATTCCTTGGGTGTTCTGCTTTGACAAAAACTGTCGAGCTAATAACTTAGTACCAATGGAAATTGCTCTTAAAATTGTGAACAAGATCAAAGCTAATGAAAGATTTTCAGCCTACATACTTATCCCAATGTGGCCAGAAGGTGTTCCTACAAGCGTGTTTATGCAAAGAATTCTTCTGTGGCAGAGTATGACAATAGAAATGATGTACAAAATGATATACAAAGCTTTGGAGGAGGTTGGCCTTCATGAAAAATATGAACCTGAAGACTACCTCAACTTTTTTTGCCTGGGAAATCGTGAGGCACTGGTTCGTAAGAATCGACGCTTTATGATCTATGTTCATTCTAAAGGAATGATAGTAGATGATGAGTATGTCATATTGGGATCGGCAAATATCAATCAACGATCGCTTGCAGGTACTAGAGACACCGAAATAGCAATGGGTGCATATCAGCCTTGCCATACATGGTCACCAAACAAATGCTCAAGCCCACGCGGTCAGGTGTATGGATATAGAATGTCATTATGGGCAGAGCACACAGGAACAATGGAGGAATGTTTCGAGAGACCAGAGAGCATTGAATGTGTAAGACGAATCAGATCATTGGGTGAGAGAAACTGGAGACAATATGTAGCTGAGGAAGTGACTGAAATGAGAAGTCATCTTCTTAAATATCCATTGCAAGTTGATCCAACTGGTAAGGTAACCCATCTTCCTGGTTGTGAAAGCTTCCCAGACCTTGGTGGCAACATATTGGGTAGTGAAGGTGACAACATAGTGGTTGGTATCAGAGCCCAATTTTTAAGTTCTATAGACTCGCTTTACATCGTAAGCATCAGATTTTTCCATAGCAAGCTCAAGAGAACACGTCCTGTCACCACCAGGGGTGGTAGAGGACAAGCACTTCCAGAACAGGCAGACCCTGCCATGGACCTTCAGGTAATTTTGGACCACCATGGTGTACAAGGAGTTGACGAGGACAATCGGGCAGAGATAGGACCAGGAGACGACCCAGAGGAAGACCGGACCAACGGGCCAGGCCAACGTGGCCCGACCCGTACGGTCGGCCTCGGCCTTGGGCCGAGGCTGCACGGGCCGAGTCCGTTTGCCTCCGCTCGATCCCTCCTGCCTCTGGCCGCCCCGGTTCCGCCTGCATTGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCA 1383 47.07 MLRRSKTLKGRVGCRDQCEKSLENENPRSLEIWHEIFDFQKILRKSRESRNLLESPVAAANGAQIPWVFCFDKNCRANNLVPMEIALKIVNKIKANERFSAYILIPMWPEGVPTSVFMQRILLWQSMTIEMMYKMIYKALEEVGLHEKYEPEDYLNFFCLGNREALVRKNRRFMIYVHSKGMIVDDEYVILGSANINQRSLAGTRDTEIAMGAYQPCHTWSPNKCSSPRGQVYGYRMSLWAEHTGTMEECFERPESIECVRRIRSLGERNWRQYVAEEVTEMRSHLLKYPLQVDPTGKVTHLPGCESFPDLGGNILGSEGDNIVVGIRAQFLSSIDSLYIVSIRFFHSKLKRTRPVTTRGGRGQALPEQADPAMDLQVILDHHGVQGVDEDNRAEIGPGDDPEEDRTNGPGQRGPTRTVGLGLGPRLHGPSPFASARSLLPLAAPVPPALEAVWLAPHRCA 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42482229 42496002 - Maker00015844 Lcy6g1993 636437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1993 461 PANTHER PHOSPHOLIPASE D 73 316 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lcy6g1993 461 SUPERFAMILY Phospholipase D/nuclease 84 260 - -
Lcy6g1993 461 Pfam Phospholipase D C terminal 248 318 IPR024632 -
Lcy6g1993 461 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 173 200 IPR001736 GO:0003824(InterPro)
Lcy6g1993 461 MobiDBLite consensus disorder prediction 387 410 - -
Lcy6g1993 461 Gene3D Endonuclease Chain A 57 217 - -
Lcy6g1993 461 MobiDBLite consensus disorder prediction 387 427 - -
Lcy6g1993 461 Pfam Phospholipase D Active site motif 175 200 IPR001736 GO:0003824(InterPro)
Lcy6g1993 461 SMART pld_4 173 200 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1993 Lcy-Chr6:42482229 Lcy8g0110 Lcy-Chr8:2560064 5.30E-26 dispersed
Lcy6g1993 Lcy-Chr6:42482229 Lcy6g1997 Lcy-Chr6:42548569 3.30E-146 proximal
Lcy11g0022 Lcy-Chr11:213577 Lcy6g1993 Lcy-Chr6:42482229 1.66E-34 transposed
Lcy3g0257 Lcy-Chr3:8312707 Lcy6g1993 Lcy-Chr6:42482229 6.48E-15 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1993 K01115 - csv:101208016 428.713