Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1995 ATGACGTTACACATTGCACTTGCTAGGGTATTAAGTGAAGCTACAACAATATATTCGCACCATCAGAAAACAGTCATTGTGGATGCAGATGCTGACAATGACAAAAGAAAGATTGTTGCTTTTGTTGGAGGTCTTGATTTATGCTCGGGCAGATATGATACTCCCAAACATTCTCTTTTTCGGACATTGCAAACTACACATATGAACGACTACTATAACCATAATTTCAAGGGACCAACTACTGGTTGTCCAAGACAGCCATGGCATGATTTGCACTGTAAAATTGAAGGTCCAGCTGCATACGATGTGCTTGCAAATTTTGAGGAACGTTGGTTGAGAGATTCTGAGCCTCATGGGCTTAAGAAGCTTAAAAGGCTTCATAAGTTGAGTGATGATATATTGCTCAAACTTGAAGGAATTCCTGAAATTTTGGGAATTGCTGATGTTTCCAAGTTGTGTAGTGATCATCCAGAAGGTTGGAATGTTCAGGTTTTTCGTTCGATCGATTCCAATTCTGTGAAAGAATTTCCTGAAAATCCAAAAGATGATAAAAGTAGGAACTTGGTATGTGGAAAGAATGTGATGATAGATATGAGTATACATTCAGCATATGTTAATGCAATTCGTGCTGCCCAACGTTTCATTTACATTGAAAATCAATACTTCCTTGGATCATCTTATAATTGGAGTGCTCTTAATGAGAAAGGTAAGCAACTCTAA 720 37.78 MTLHIALARVLSEATTIYSHHQKTVIVDADADNDKRKIVAFVGGLDLCSGRYDTPKHSLFRTLQTTHMNDYYNHNFKGPTTGCPRQPWHDLHCKIEGPAAYDVLANFEERWLRDSEPHGLKKLKRLHKLSDDILLKLEGIPEILGIADVSKLCSDHPEGWNVQVFRSIDSNSVKEFPENPKDDKSRNLVCGKNVMIDMSIHSAYVNAIRAAQRFIYIENQYFLGSSYNWSALNEKGKQL 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42514997 42516905 - Maker00015928 Lcy6g1995 636439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1995 239 PANTHER PHOSPHOLIPASE D 9 233 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lcy6g1995 239 Pfam Phospholipase D Active site motif 18 51 IPR001736 GO:0003824(InterPro)
Lcy6g1995 239 SUPERFAMILY Phospholipase D/nuclease 17 115 - -
Lcy6g1995 239 Gene3D Endonuclease Chain A 1 131 - -
Lcy6g1995 239 SUPERFAMILY Phospholipase D/nuclease 182 232 - -
Lcy6g1995 239 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 16 51 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1995 Lcy-Chr6:42514997 Lcy6g1997 Lcy-Chr6:42548569 1.78E-128 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1995 K01115 - csv:101208016 363.614