Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1996 ATGGCTGGTCACCTTTACGAAACCTTGTCATTTGATGGGTCGAAGCATGGTCAAGGTCATCAATCTTTTCCATTTTCCTCTGCCAATGAATCGTTGAAGGTTTTGCTTTTGCATGGCTATTTGGACATTTGGGTCAAGGAAGCCAAAAACCTTCCCAATATGGACTTGTTCCGTAAGAAACTTTTAGGTAAATTGTCAAAAGTTTCCTCAAGGGCTTTCAAAAAAGTCGCCGAAAGAATGACCAGTGATCCGTACGTGACGATATCTGTATCGGGTGTTGTGATTGGAAGAACTTTCGTGATTGATAATAATGAGAATCCTGTTTGGATGCAACACTTTTATGTTCCTGTGGCTCATTATGGTGCAGAAGTGCTGTTTGTTGTCAAGGATCATGATGCCGTGGGATCAGAAACCATCGGTACTGTTGCAATCCCAGTGGAGCAATTATGTTCGGGTTCCAAGGTTGAGGGAGCCTTTCCAATCCTAGATAGTAGTAGGCAGCCTTGCAAGCCTGGGGCAGTTTTGAGTTTGTCGATTCGGTATACTCCGGTGGACCGAACAACGATTTTCGACGGCGGAATGTATGCTTCTCCTGATTACCAGGGAGTTTCTGGCACATATTTTCCTCTTAGAAAAGGGGGGAAAGTTACACTGTACCAAGACGCCCATGTCGAGGAACATGGCTGTCTTCCAACAGATTTTAGGCTTGAATATGAACACAGGAGTTGTTGGGGCGACATCTGTGAAGCAATTAGTCATGCTCGTCATTTAATCTATATTACAGGTTGGTCTGTGTACCATGAAGTTAGACTTGTTCGAGATGGCAGTAAGGCCGGAGAATGCATGCTAGGAGACCTTCTCAAAGCCAAGTCTCAGGAAGGAGTAAGAGTATTGCTTCTTGTATGGGACGATCCAACATCACATAGGATTTTGGGACATACAAAGGTATGTAGCTACTAA 960 44.06 MAGHLYETLSFDGSKHGQGHQSFPFSSANESLKVLLLHGYLDIWVKEAKNLPNMDLFRKKLLGKLSKVSSRAFKKVAERMTSDPYVTISVSGVVIGRTFVIDNNENPVWMQHFYVPVAHYGAEVLFVVKDHDAVGSETIGTVAIPVEQLCSGSKVEGAFPILDSSRQPCKPGAVLSLSIRYTPVDRTTIFDGGMYASPDYQGVSGTYFPLRKGGKVTLYQDAHVEEHGCLPTDFRLEYEHRSCWGDICEAISHARHLIYITGWSVYHEVRLVRDGSKAGECMLGDLLKAKSQEGVRVLLLVWDDPTSHRILGHTKVCSY 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42530557 42531516 - Maker00015858 Lcy6g1996 636440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1996 319 Pfam C2 domain 39 160 IPR000008 -
Lcy6g1996 319 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 37 184 IPR035892 -
Lcy6g1996 319 PANTHER PHOSPHOLIPASE D 36 311 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lcy6g1996 319 SMART C2_3c 40 158 IPR000008 -
Lcy6g1996 319 CDD C2_plant_PLD 33 182 - -
Lcy6g1996 319 ProSiteProfiles C2 domain profile. 20 159 IPR000008 -
Lcy6g1996 319 SUPERFAMILY Phospholipase D/nuclease 201 308 - -
Lcy6g1996 319 Gene3D C2 domain 34 170 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1996 K01115 - - csv:101208016 477.633
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1996 Lcy-Chr6:42530557 Lcy6g1997 Lcy-Chr6:42548569 1.22E-166 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy3g2047 . 1 809 Phospholipase D Gene Family (Wang group) AT1G52570 81.6 0.0e+00 1412.1
Lcy12g0595 . 1 808 Phospholipase D Gene Family (Wang group) AT1G52570 77.3 0.0e+00 1360.9
Lcy13g0160 . 31 762 Phospholipase D Gene Family (Wang group) AT1G55180 60.0 5.9e-270 927.5
Lcy3g2047 . 6 809 Phospholipase D Gene Family (Wang group) AT3G15730 81.9 0.0e+00 1412.5
Lcy12g0595 . 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 76.9 0.0e+00 1359.7
Lcy3g2047 . 73 809 Phospholipase D Gene Family (Wang group) AT5G25370 64.1 2.9e-293 1005.0
Lcy12g0595 . 72 808 Phospholipase D Gene Family (Wang group) AT5G25370 63.7 1.2e-291 999.6
Lcy13g0616 . 125 1238 Phospholipase D Gene Family (Wang group) AT2G42010 62.0 0.0e+00 1366.3
Lcy6g1997 . 31 850 Phospholipase D Gene Family (Wang group) AT2G42010 69.2 0.0e+00 1250.0
Lcy13g1878 . 3 855 Phospholipase D Gene Family (Wang group) AT2G42010 53.2 1.4e-270 930.2
Lcy1g0587 . 4 846 Phospholipase D Gene Family (Wang group) AT2G42010 52.4 2.1e-263 906.4
Lcy6g1996 . 31 313 Phospholipase D Gene Family (Wang group) AT2G42010 63.1 4.9e-103 373.6
Lcy6g1993 . 73 318 Phospholipase D Gene Family (Wang group) AT2G42010 60.8 7.8e-101 366.3
Lcy6g1995 . 13 236 Phospholipase D Gene Family (Wang group) AT2G42010 66.1 2.6e-88 324.7
Lcy13g0616 . 334 1238 Phospholipase D Gene Family (Wang group) AT4G00240 66.5 0.0e+00 1199.5
Lcy6g1997 . 83 850 Phospholipase D Gene Family (Wang group) AT4G00240 69.7 0.0e+00 1150.6
Lcy13g1878 . 62 855 Phospholipase D Gene Family (Wang group) AT4G00240 55.1 2.7e-257 885.6
Lcy1g0587 . 71 846 Phospholipase D Gene Family (Wang group) AT4G00240 55.0 2.0e-252 869.4
Lcy6g1993 . 73 318 Phospholipase D Gene Family (Wang group) AT4G00240 62.8 8.2e-97 352.4
Lcy6g1995 . 13 236 Phospholipase D Gene Family (Wang group) AT4G00240 65.6 2.2e-86 317.8
Lcy6g1996 . 76 313 Phospholipase D Gene Family (Wang group) AT4G00240 64.2 1.2e-84 312.0
Lcy6g1997 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.9 1.1e-245 846.7
Lcy13g0616 . 263 1022 Phospholipase D Gene Family (Wang group) AT4G11830 54.8 4.6e-231 798.1
Lcy13g1878 . 12 643 Phospholipase D Gene Family (Wang group) AT4G11830 50.8 1.3e-180 630.6
Lcy6g1996 . 13 307 Phospholipase D Gene Family (Wang group) AT4G11830 59.3 4.6e-98 356.3
Lcy6g1995 . 12 236 Phospholipase D Gene Family (Wang group) AT4G11830 61.8 1.7e-79 294.7
Lcy6g1997 . 7 850 Phospholipase D Gene Family (Wang group) AT4G11840 64.9 0.0e+00 1141.7
Lcy13g0616 . 254 1238 Phospholipase D Gene Family (Wang group) AT4G11840 56.6 0.0e+00 1093.6
Lcy1g0587 . 10 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.8 7.6e-250 860.9
Lcy13g1878 . 12 855 Phospholipase D Gene Family (Wang group) AT4G11840 50.8 6.7e-246 847.8
Lcy6g1993 . 72 318 Phospholipase D Gene Family (Wang group) AT4G11840 64.2 4.7e-98 356.7
Lcy6g1996 . 7 312 Phospholipase D Gene Family (Wang group) AT4G11840 54.7 2.2e-87 321.2
Lcy6g1995 . 12 236 Phospholipase D Gene Family (Wang group) AT4G11840 63.6 9.5e-83 305.8
Lcy6g1997 . 7 850 Phospholipase D Gene Family (Wang group) AT4G11850 68.2 0.0e+00 1209.1
Lcy13g0616 . 254 1238 Phospholipase D Gene Family (Wang group) AT4G11850 60.1 0.0e+00 1162.5
Lcy1g0587 . 10 846 Phospholipase D Gene Family (Wang group) AT4G11850 52.7 7.8e-258 887.5
Lcy13g1878 . 12 855 Phospholipase D Gene Family (Wang group) AT4G11850 51.2 3.8e-252 868.6
Lcy6g1996 . 7 312 Phospholipase D Gene Family (Wang group) AT4G11850 60.5 6.5e-103 372.9
Lcy6g1993 . 72 318 Phospholipase D Gene Family (Wang group) AT4G11850 63.7 1.8e-97 354.8
Lcy6g1995 . 12 236 Phospholipase D Gene Family (Wang group) AT4G11850 64.0 2.6e-83 307.8
Lcy1g0587 . 1 693 Phospholipase D Gene Family (Wang group) AT4G35790 70.7 2.5e-299 1025.0
Lcy13g1878 . 6 684 Phospholipase D Gene Family (Wang group) AT4G35790 65.5 2.7e-277 951.8
Lcy12g0767 . 40 1115 Phospholipase D Gene Family (Wang group) AT3G05630 61.2 0.0e+00 1325.5
Lcy4g1814 . 1 1122 Phospholipase D Gene Family (Wang group) AT3G05630 59.8 0.0e+00 1315.4
Lcy12g0767 . 1 991 Phospholipase D Gene Family (Wang group) AT3G16785 72.6 0.0e+00 1459.5
Lcy4g1814 . 19 995 Phospholipase D Gene Family (Wang group) AT3G16785 59.9 0.0e+00 1162.9
Lcy3g2047 . 6 809 Phospholipase D Gene Family (Wang group) AT3G15730 81.9 0.0e+00 1412.5
Lcy12g0595 . 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 76.9 0.0e+00 1359.7
Lcy3g2047 . 1 809 Phospholipase D Gene Family (Wang group) AT1G52570 81.6 0.0e+00 1412.1
Lcy12g0595 . 1 808 Phospholipase D Gene Family (Wang group) AT1G52570 77.3 0.0e+00 1360.9
Lcy13g0616 . 125 1238 Phospholipase D Gene Family (Wang group) AT2G42010 62.0 0.0e+00 1366.3
Lcy6g1997 . 31 850 Phospholipase D Gene Family (Wang group) AT2G42010 69.2 0.0e+00 1250.0
Lcy13g1878 . 3 855 Phospholipase D Gene Family (Wang group) AT2G42010 53.2 1.4e-270 930.2
Lcy1g0587 . 4 846 Phospholipase D Gene Family (Wang group) AT2G42010 52.4 2.1e-263 906.4
Lcy6g1996 . 31 313 Phospholipase D Gene Family (Wang group) AT2G42010 63.1 4.9e-103 373.6
Lcy6g1993 . 73 318 Phospholipase D Gene Family (Wang group) AT2G42010 60.8 7.8e-101 366.3
Lcy6g1995 . 13 236 Phospholipase D Gene Family (Wang group) AT2G42010 66.1 2.6e-88 324.7
Lcy13g0616 . 334 1238 Phospholipase D Gene Family (Wang group) AT4G00240 66.5 0.0e+00 1199.5
Lcy6g1997 . 83 850 Phospholipase D Gene Family (Wang group) AT4G00240 69.7 0.0e+00 1150.6
Lcy13g1878 . 62 855 Phospholipase D Gene Family (Wang group) AT4G00240 55.1 2.7e-257 885.6
Lcy1g0587 . 71 846 Phospholipase D Gene Family (Wang group) AT4G00240 55.0 2.0e-252 869.4
Lcy6g1993 . 73 318 Phospholipase D Gene Family (Wang group) AT4G00240 62.8 8.2e-97 352.4
Lcy6g1995 . 13 236 Phospholipase D Gene Family (Wang group) AT4G00240 65.6 2.2e-86 317.8
Lcy6g1996 . 76 313 Phospholipase D Gene Family (Wang group) AT4G00240 64.2 1.2e-84 312.0
Lcy6g1997 . 7 850 Phospholipase D Gene Family (Wang group) AT4G11850 68.2 0.0e+00 1209.1
Lcy13g0616 . 254 1238 Phospholipase D Gene Family (Wang group) AT4G11850 60.1 0.0e+00 1162.5
Lcy1g0587 . 10 846 Phospholipase D Gene Family (Wang group) AT4G11850 52.7 7.8e-258 887.5
Lcy13g1878 . 12 855 Phospholipase D Gene Family (Wang group) AT4G11850 51.2 3.8e-252 868.6
Lcy6g1996 . 7 312 Phospholipase D Gene Family (Wang group) AT4G11850 60.5 6.5e-103 372.9
Lcy6g1993 . 72 318 Phospholipase D Gene Family (Wang group) AT4G11850 63.7 1.8e-97 354.8
Lcy6g1995 . 12 236 Phospholipase D Gene Family (Wang group) AT4G11850 64.0 2.6e-83 307.8
Lcy6g1997 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.9 1.1e-245 846.7
Lcy13g0616 . 263 1022 Phospholipase D Gene Family (Wang group) AT4G11830 54.8 4.6e-231 798.1
Lcy13g1878 . 12 643 Phospholipase D Gene Family (Wang group) AT4G11830 50.8 1.3e-180 630.6
Lcy6g1996 . 13 307 Phospholipase D Gene Family (Wang group) AT4G11830 59.3 4.6e-98 356.3
Lcy6g1995 . 12 236 Phospholipase D Gene Family (Wang group) AT4G11830 61.8 1.7e-79 294.7
Lcy6g1997 . 7 850 Phospholipase D Gene Family (Wang group) AT4G11840 64.9 0.0e+00 1141.7
Lcy13g0616 . 254 1238 Phospholipase D Gene Family (Wang group) AT4G11840 56.6 0.0e+00 1093.6
Lcy1g0587 . 10 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.8 7.6e-250 860.9
Lcy13g1878 . 12 855 Phospholipase D Gene Family (Wang group) AT4G11840 50.8 6.7e-246 847.8
Lcy6g1993 . 72 318 Phospholipase D Gene Family (Wang group) AT4G11840 64.2 4.7e-98 356.7
Lcy6g1996 . 7 312 Phospholipase D Gene Family (Wang group) AT4G11840 54.7 2.2e-87 321.2
Lcy6g1995 . 12 236 Phospholipase D Gene Family (Wang group) AT4G11840 63.6 9.5e-83 305.8
Lcy1g0587 . 1 693 Phospholipase D Gene Family (Wang group) AT4G35790 70.7 2.5e-299 1025.0
Lcy13g1878 . 6 684 Phospholipase D Gene Family (Wang group) AT4G35790 65.5 2.7e-277 951.8
Lcy13g0160 . 31 762 Phospholipase D Gene Family (Wang group) AT1G55180 60.0 5.9e-270 927.5
Lcy3g2047 . 73 809 Phospholipase D Gene Family (Wang group) AT5G25370 64.1 2.9e-293 1005.0
Lcy12g0595 . 72 808 Phospholipase D Gene Family (Wang group) AT5G25370 63.7 1.2e-291 999.6
Lcy12g0767 . 1 991 Phospholipase D Gene Family (Wang group) AT3G16785 72.6 0.0e+00 1459.5
Lcy4g1814 . 19 995 Phospholipase D Gene Family (Wang group) AT3G16785 59.9 0.0e+00 1162.9
Lcy12g0767 . 40 1115 Phospholipase D Gene Family (Wang group) AT3G05630 61.2 0.0e+00 1325.5
Lcy4g1814 . 1 1122 Phospholipase D Gene Family (Wang group) AT3G05630 59.8 0.0e+00 1315.4
Lcy3g2047 . 6 809 Phospholipase D Gene Family (Wang group) AT3G15730 81.9 0.0e+00 1412.5
Lcy12g0595 . 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 76.9 0.0e+00 1359.7
Lcy3g2047 . 1 809 Phospholipase D Gene Family (Wang group) AT1G52570 81.6 0.0e+00 1412.1
Lcy12g0595 . 1 808 Phospholipase D Gene Family (Wang group) AT1G52570 77.3 0.0e+00 1360.9
Lcy3g2047 . 73 809 Phospholipase D Gene Family (Wang group) AT5G25370 64.1 2.9e-293 1005.0
Lcy12g0595 . 72 808 Phospholipase D Gene Family (Wang group) AT5G25370 63.7 1.2e-291 999.6
Lcy13g0160 . 31 762 Phospholipase D Gene Family (Wang group) AT1G55180 60.0 5.9e-270 927.5
Lcy13g0616 . 125 1238 Phospholipase D Gene Family (Wang group) AT2G42010 62.0 0.0e+00 1366.3
Lcy6g1997 . 31 850 Phospholipase D Gene Family (Wang group) AT2G42010 69.2 0.0e+00 1250.0
Lcy13g1878 . 3 855 Phospholipase D Gene Family (Wang group) AT2G42010 53.2 1.4e-270 930.2
Lcy1g0587 . 4 846 Phospholipase D Gene Family (Wang group) AT2G42010 52.4 2.1e-263 906.4
Lcy6g1996 . 31 313 Phospholipase D Gene Family (Wang group) AT2G42010 63.1 4.9e-103 373.6
Lcy6g1993 . 73 318 Phospholipase D Gene Family (Wang group) AT2G42010 60.8 7.8e-101 366.3
Lcy6g1995 . 13 236 Phospholipase D Gene Family (Wang group) AT2G42010 66.1 2.6e-88 324.7
Lcy13g0616 . 334 1238 Phospholipase D Gene Family (Wang group) AT4G00240 66.5 0.0e+00 1199.5
Lcy6g1997 . 83 850 Phospholipase D Gene Family (Wang group) AT4G00240 69.7 0.0e+00 1150.6
Lcy13g1878 . 62 855 Phospholipase D Gene Family (Wang group) AT4G00240 55.1 2.7e-257 885.6
Lcy1g0587 . 71 846 Phospholipase D Gene Family (Wang group) AT4G00240 55.0 2.0e-252 869.4
Lcy6g1993 . 73 318 Phospholipase D Gene Family (Wang group) AT4G00240 62.8 8.2e-97 352.4
Lcy6g1995 . 13 236 Phospholipase D Gene Family (Wang group) AT4G00240 65.6 2.2e-86 317.8
Lcy6g1996 . 76 313 Phospholipase D Gene Family (Wang group) AT4G00240 64.2 1.2e-84 312.0
Lcy6g1997 . 7 850 Phospholipase D Gene Family (Wang group) AT4G11850 68.2 0.0e+00 1209.1
Lcy13g0616 . 254 1238 Phospholipase D Gene Family (Wang group) AT4G11850 60.1 0.0e+00 1162.5
Lcy1g0587 . 10 846 Phospholipase D Gene Family (Wang group) AT4G11850 52.7 7.8e-258 887.5
Lcy13g1878 . 12 855 Phospholipase D Gene Family (Wang group) AT4G11850 51.2 3.8e-252 868.6
Lcy6g1996 . 7 312 Phospholipase D Gene Family (Wang group) AT4G11850 60.5 6.5e-103 372.9
Lcy6g1993 . 72 318 Phospholipase D Gene Family (Wang group) AT4G11850 63.7 1.8e-97 354.8
Lcy6g1995 . 12 236 Phospholipase D Gene Family (Wang group) AT4G11850 64.0 2.6e-83 307.8
Lcy6g1997 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.9 1.1e-245 846.7
Lcy13g0616 . 263 1022 Phospholipase D Gene Family (Wang group) AT4G11830 54.8 4.6e-231 798.1
Lcy13g1878 . 12 643 Phospholipase D Gene Family (Wang group) AT4G11830 50.8 1.3e-180 630.6
Lcy6g1996 . 13 307 Phospholipase D Gene Family (Wang group) AT4G11830 59.3 4.6e-98 356.3
Lcy6g1995 . 12 236 Phospholipase D Gene Family (Wang group) AT4G11830 61.8 1.7e-79 294.7
Lcy6g1997 . 7 850 Phospholipase D Gene Family (Wang group) AT4G11840 64.9 0.0e+00 1141.7
Lcy13g0616 . 254 1238 Phospholipase D Gene Family (Wang group) AT4G11840 56.6 0.0e+00 1093.6
Lcy1g0587 . 10 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.8 7.6e-250 860.9
Lcy13g1878 . 12 855 Phospholipase D Gene Family (Wang group) AT4G11840 50.8 6.7e-246 847.8
Lcy6g1993 . 72 318 Phospholipase D Gene Family (Wang group) AT4G11840 64.2 4.7e-98 356.7
Lcy6g1996 . 7 312 Phospholipase D Gene Family (Wang group) AT4G11840 54.7 2.2e-87 321.2
Lcy6g1995 . 12 236 Phospholipase D Gene Family (Wang group) AT4G11840 63.6 9.5e-83 305.8
Lcy1g0587 . 1 693 Phospholipase D Gene Family (Wang group) AT4G35790 70.7 2.5e-299 1025.0
Lcy13g1878 . 6 684 Phospholipase D Gene Family (Wang group) AT4G35790 65.5 2.7e-277 951.8
Lcy12g0767 . 1 991 Phospholipase D Gene Family (Wang group) AT3G16785 72.6 0.0e+00 1459.5
Lcy4g1814 . 19 995 Phospholipase D Gene Family (Wang group) AT3G16785 59.9 0.0e+00 1162.9
Lcy12g0767 . 40 1115 Phospholipase D Gene Family (Wang group) AT3G05630 61.2 0.0e+00 1325.5
Lcy4g1814 . 1 1122 Phospholipase D Gene Family (Wang group) AT3G05630 59.8 0.0e+00 1315.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030541 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 2