Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1996 ATGGCTGGTCACCTTTACGAAACCTTGTCATTTGATGGGTCGAAGCATGGTCAAGGTCATCAATCTTTTCCATTTTCCTCTGCCAATGAATCGTTGAAGGTTTTGCTTTTGCATGGCTATTTGGACATTTGGGTCAAGGAAGCCAAAAACCTTCCCAATATGGACTTGTTCCGTAAGAAACTTTTAGGTAAATTGTCAAAAGTTTCCTCAAGGGCTTTCAAAAAAGTCGCCGAAAGAATGACCAGTGATCCGTACGTGACGATATCTGTATCGGGTGTTGTGATTGGAAGAACTTTCGTGATTGATAATAATGAGAATCCTGTTTGGATGCAACACTTTTATGTTCCTGTGGCTCATTATGGTGCAGAAGTGCTGTTTGTTGTCAAGGATCATGATGCCGTGGGATCAGAAACCATCGGTACTGTTGCAATCCCAGTGGAGCAATTATGTTCGGGTTCCAAGGTTGAGGGAGCCTTTCCAATCCTAGATAGTAGTAGGCAGCCTTGCAAGCCTGGGGCAGTTTTGAGTTTGTCGATTCGGTATACTCCGGTGGACCGAACAACGATTTTCGACGGCGGAATGTATGCTTCTCCTGATTACCAGGGAGTTTCTGGCACATATTTTCCTCTTAGAAAAGGGGGGAAAGTTACACTGTACCAAGACGCCCATGTCGAGGAACATGGCTGTCTTCCAACAGATTTTAGGCTTGAATATGAACACAGGAGTTGTTGGGGCGACATCTGTGAAGCAATTAGTCATGCTCGTCATTTAATCTATATTACAGGTTGGTCTGTGTACCATGAAGTTAGACTTGTTCGAGATGGCAGTAAGGCCGGAGAATGCATGCTAGGAGACCTTCTCAAAGCCAAGTCTCAGGAAGGAGTAAGAGTATTGCTTCTTGTATGGGACGATCCAACATCACATAGGATTTTGGGACATACAAAGGTATGTAGCTACTAA 960 44.06 MAGHLYETLSFDGSKHGQGHQSFPFSSANESLKVLLLHGYLDIWVKEAKNLPNMDLFRKKLLGKLSKVSSRAFKKVAERMTSDPYVTISVSGVVIGRTFVIDNNENPVWMQHFYVPVAHYGAEVLFVVKDHDAVGSETIGTVAIPVEQLCSGSKVEGAFPILDSSRQPCKPGAVLSLSIRYTPVDRTTIFDGGMYASPDYQGVSGTYFPLRKGGKVTLYQDAHVEEHGCLPTDFRLEYEHRSCWGDICEAISHARHLIYITGWSVYHEVRLVRDGSKAGECMLGDLLKAKSQEGVRVLLLVWDDPTSHRILGHTKVCSY 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42530557 42531516 - Maker00015858 Lcy6g1996 636440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1996 319 Pfam C2 domain 39 160 IPR000008 -
Lcy6g1996 319 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 37 184 IPR035892 -
Lcy6g1996 319 PANTHER PHOSPHOLIPASE D 36 311 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lcy6g1996 319 SMART C2_3c 40 158 IPR000008 -
Lcy6g1996 319 CDD C2_plant_PLD 33 182 - -
Lcy6g1996 319 ProSiteProfiles C2 domain profile. 20 159 IPR000008 -
Lcy6g1996 319 SUPERFAMILY Phospholipase D/nuclease 201 308 - -
Lcy6g1996 319 Gene3D C2 domain 34 170 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1996 Lcy-Chr6:42530557 Lcy6g1997 Lcy-Chr6:42548569 1.22E-166 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1996 K01115 - csv:101208016 477.633