Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1997 ATGGCTGGTCGCATTTTGGAAACTTTGTCATTTGGTGGGTCGCAACATGGTCAAGGTAATCAATCTTGGCCATTTTCATCTGCAAATGCATCATTGAAGATTTTGCTCTTGCATGGTTATTTGGACATTTGGGTCAAGGGAGCCAAGAACCTTCCCAATATGGACATGTTTCATAAGACTCTTGGGGATGTGTTTTCAAAAGTGTCTTTTAAGGGTTCCAGAAGCAGTGATGGGGAAAAGCCTTCAAAAGTGACTAGTGACCCCTATGTGACGATTTCTGTATCAAATGCTGTGATTGGAAGAACTTTTGTAATTGATAATAATGAAAATCCTGTTTGGATGCAACATTTTAATGTTCCTGTAGCTCACTATGGTGCTGAAGTGCACTTTGTTGTCAAAGACCATGATGTTGTGGGATCACAAATCATGGGTGTTGTTGCAATTCCTGTGGAGCAATTATACTCTGGAGCCATAGTTGAGGGAACCTATCCAATCCTAAATAGTAGTAGGAAGCCCTGCAAGCCTGGGGCAGTCTTGAGTTTGTCGATTCAGTATATTCCGGCAGACCGGGCAGCCATTTTTAGCGGTGGAATGTATGCATCTCCTGATCACCAAGGAGTTTCAGACACATATTTTCCTCTTAGGAAGGGGGGTAAAGTTACATTGTACCAAGATGCCCATGTTGAGGAGGGATGTCTCCCAACAGATTTTAGGCTTCATGGTGGGGTTCAATATCAACATAGGAGCTGTTGGGAGGACATCTATGAATCAATTAGTCATGCTCGCCGTTTAATCTATATTACAGGCTGGTCTGTATACCATAATGTTAGACTAGTTAGAGATGGAAAGGCTAAAGAATGCATATTGGGGGACCTTCTCAAAGCCAAGTCTCAAGAAGGAGTAAGAGTGTTGCTTCTAATATGGGACGATCCAACTTCAAGAAGTATGTTGGGATATAAAACGGCTGGGATGATGAATACAAATGATGAGGAAACTCGTCGGTTTTTTAAGAACTCTTCAGTCCAAGTGATTTTGTGTCCAAGATCTGGTGGAAAAGGTCATAGTTGGATTAAGAAACAGGAAGCTGGAACCATCTATACCCACCATCAGAAGACAGTTATTGTAGATGCTGATGCTGGCAATCACAAAAGAAAAATTGTAGCTTTTGTTGGAGGTCTCGATTTATGTTTGGGTCGATATGATACTTCAAGACATCCTCTTTTCCGGACATTGCAAACCACACATGTGGATGACTATCATAACCCTAATTTTACGGGACCAACTACTGGTTGTCCAAGAGAACCATGGCATGATTTGCACTCTAAGATTGATGGTCCAGCGGCATATGATGTCCTTGCGAATTTTGAGGAGCGTTGGTTGAGAGCTTCAGAGCCTCATGGGCTTAGAAAGCTAAAAAAGTTACATGAAGATGTGTTGCTCAAAATTGAAAGAATTCCTGAAATTTTGGGAATTGCTGATGCTTCTCGACTGTGTAATAATGATCCAGAAGGTTGGAACGTCCAGATTTTCCGTTCAATTGATTCCAATTCTGTGAAAGGATTTCCTGATGAGCCAAAAGATGCTATCAAGAGGAACTTAGTATGTGGAAAGAATGTGATGATAGACATGAGTATACATTCAGCATATGTTAATGCCATTCGTGCTGCCCAACGCTTCATTTATATTGAAAACCAATACTTCCTTGGGTCATCTTATAATTGGAGTGCTCACAAAGACTTGGGGGCCAATAACTTAATACCAATGGAAATTGCCCTTAAAATTGTGGAGAAAATCAAAGCTAAAGAAAGGTTTTCGGCATACGTGGTTATCCCAATGTGGCCGGAAGGTGTTCCTACAAGCACTCCTATTCAAAGAATTCTTTTCTGGCAGAGTAGGACAATGCAAATGATGTATGAAATGATATATAATGCTTTAGAGGAGGTTGGACTTCATAAAACATATGAGCCTCAAGACTACTTGAATTTCTTCTGCCTTGGAAACCGTGAGGTGCTCGATAGAAATGGTGTTGAAGCCGGGAACGGAGAAAAAAATGCTCAATCACTTGTCCGTAAGAGTCGACGCTTTATGATCTATGTTCATTCTAAAGGAATGATAGTAGATGATGAGTATGTCATATTGGGATCTGCAAATATCAATCAAAGGTCGCTTGAAGGTACTAGAGACACTGAAATAGCAATGGGTGCATATCAACCTCGTCATACATGGTCAAGTAAACGCTCAAGCCCACGTGGTCAGGTCTATGGATATAGAATGTCATTATGGGCTGAGCACACAGGAACAATGGAGGAATGTTTCGAGAGACCAGAGAGCATTGAATGTGTAAGACGAATCAGATCATTGGGTGAGAGAAACTGGAGACAATATGTAGCTGAGGAAGTGACTGAAATGAGAAGTCATCTTCTTAAATATCCATTGCAAGTTGATCCAACTGGTAAGGTAACCCATCTTCCTGGTTGTGAAAGCTTCCCAGACCTTGGTGGCAACATATTGGGAACATTCATTGCCATCCAAGAGAACCTTACAATTTGA 2550 41.18 MAGRILETLSFGGSQHGQGNQSWPFSSANASLKILLLHGYLDIWVKGAKNLPNMDMFHKTLGDVFSKVSFKGSRSSDGEKPSKVTSDPYVTISVSNAVIGRTFVIDNNENPVWMQHFNVPVAHYGAEVHFVVKDHDVVGSQIMGVVAIPVEQLYSGAIVEGTYPILNSSRKPCKPGAVLSLSIQYIPADRAAIFSGGMYASPDHQGVSDTYFPLRKGGKVTLYQDAHVEEGCLPTDFRLHGGVQYQHRSCWEDIYESISHARRLIYITGWSVYHNVRLVRDGKAKECILGDLLKAKSQEGVRVLLLIWDDPTSRSMLGYKTAGMMNTNDEETRRFFKNSSVQVILCPRSGGKGHSWIKKQEAGTIYTHHQKTVIVDADAGNHKRKIVAFVGGLDLCLGRYDTSRHPLFRTLQTTHVDDYHNPNFTGPTTGCPREPWHDLHSKIDGPAAYDVLANFEERWLRASEPHGLRKLKKLHEDVLLKIERIPEILGIADASRLCNNDPEGWNVQIFRSIDSNSVKGFPDEPKDAIKRNLVCGKNVMIDMSIHSAYVNAIRAAQRFIYIENQYFLGSSYNWSAHKDLGANNLIPMEIALKIVEKIKAKERFSAYVVIPMWPEGVPTSTPIQRILFWQSRTMQMMYEMIYNALEEVGLHKTYEPQDYLNFFCLGNREVLDRNGVEAGNGEKNAQSLVRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSLEGTRDTEIAMGAYQPRHTWSSKRSSPRGQVYGYRMSLWAEHTGTMEECFERPESIECVRRIRSLGERNWRQYVAEEVTEMRSHLLKYPLQVDPTGKVTHLPGCESFPDLGGNILGTFIAIQENLTI 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42548569 42556280 - Maker00015899 Lcy6g1997 636441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1997 849 Gene3D Endonuclease Chain A 509 747 - -
Lcy6g1997 849 ProSiteProfiles C2 domain profile. 22 163 IPR000008 -
Lcy6g1997 849 FunFam Phospholipase D 512 741 - -
Lcy6g1997 849 FunFam Phospholipase D delta 241 478 - -
Lcy6g1997 849 PIRSF PLD_plant 26 849 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Lcy6g1997 849 Gene3D Endonuclease Chain A 239 478 - -
Lcy6g1997 849 SMART C2_3c 40 162 IPR000008 -
Lcy6g1997 849 Pfam Phospholipase D C terminal 769 839 IPR024632 -
Lcy6g1997 849 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 37 187 IPR035892 -
Lcy6g1997 849 CDD C2_plant_PLD 35 186 - -
Lcy6g1997 849 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 364 399 IPR001736 GO:0003824(InterPro)
Lcy6g1997 849 SUPERFAMILY Phospholipase D/nuclease 545 781 - -
Lcy6g1997 849 PANTHER PHOSPHOLIPASE D 36 837 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lcy6g1997 849 SMART pld_4 364 399 IPR001736 GO:0003824(InterPro)
Lcy6g1997 849 SMART pld_4 695 722 IPR001736 GO:0003824(InterPro)
Lcy6g1997 849 Pfam C2 domain 39 164 IPR000008 -
Lcy6g1997 849 Gene3D C2 domain 34 172 IPR035892 -
Lcy6g1997 849 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 695 722 IPR001736 GO:0003824(InterPro)
Lcy6g1997 849 Pfam Phospholipase D Active site motif 366 396 IPR001736 GO:0003824(InterPro)
Lcy6g1997 849 Pfam Phospholipase D Active site motif 697 722 IPR001736 GO:0003824(InterPro)
Lcy6g1997 849 SUPERFAMILY Phospholipase D/nuclease 205 463 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0595 Lcy-Chr12:7336357 Lcy6g1997 Lcy-Chr6:42548569 5.75E-238 dispersed
Lcy13g0616 Lcy-Chr13:8158749 Lcy6g1997 Lcy-Chr6:42548569 0 dispersed
Lcy13g1878 Lcy-Chr13:37694548 Lcy6g1997 Lcy-Chr6:42548569 1.65E-300 dispersed
Lcy1g0587 Lcy-Chr1:4994397 Lcy6g1997 Lcy-Chr6:42548569 7.44E-302 dispersed
Lcy3g2047 Lcy-Chr3:47476746 Lcy6g1997 Lcy-Chr6:42548569 4.89E-245 dispersed
Lcy4g1814 Lcy-Chr4:44177311 Lcy6g1997 Lcy-Chr6:42548569 2.35E-32 dispersed
Lcy6g1993 Lcy-Chr6:42482229 Lcy6g1997 Lcy-Chr6:42548569 3.30E-146 proximal
Lcy6g1995 Lcy-Chr6:42514997 Lcy6g1997 Lcy-Chr6:42548569 1.78E-128 proximal
Lcy6g1996 Lcy-Chr6:42530557 Lcy6g1997 Lcy-Chr6:42548569 1.22E-166 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1997 K01115 - csv:101208016 1637.08