Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2003 GCAATTTCACAACTTAATTACAAGCACATAACCAAAGCAATGGCTTTCCACTTTCCTCGTCGGAGCTTTGTCGTCGTCGTCGCCTTCTTCATATCGTTTATGATGCCAGGGATGACCACTAGACCGGTGCTCGCCATCTTTCGAGCAAGCCCTTGGAAGCTCGCCCATGCCACCTTCTATGGCGATGAGACAGCATCTGAAACAATGGGAGGAGCGTGTGGATATGGAAACTTGTTCACGAATGGCTATGGTGTCGACACGGTGGCTCTAAGCTCTACACTCTTTAACAACGGCTACGCTTGCGGAACTTGCTTTCAAATCAAATGCATTCAATCCAAAGCTTGCTACGCTCACGTTGCTTTCACTACGGTGACAGCGACCAATCTTTGCCCGCCGAATTGGGCCAAACCGTCGAACAACGGCGGCTGGTGCAACCCTCCGAGGGTTCACTTCGACATGTCGAAACCGGCCTTTATGAAGATCGCTAACTGGAAGGCCGGGATCGTGCCCGTCGTTTACCGACGAGTGGCATGTGGCAAAAGGGATGGCCTTCGGTTCACACTCCAGGGAAATGGGTACTGGCTTTTGGTGTATGTGATGAATGTTGGAGGTGGAGGGGATGTGTCGGGAATGTGGGTGAAAGGGAGCAAGACAGGGTGGATCAAGATGAGCCATAATTGGGGAGCTTCCTATCAAGCATTTTCAACTTTGGTTGGCCAATCTCTGTCCTTTAGAGTCACTTCCTACACCACAAAAGAGACCATCACGACTTGGAATGTTGCTCCTTCTAATTGGAGATTTGGCGTCACCTACAAAGCCAATCTCAACTTTCGTTGA 837 50.06 AISQLNYKHITKAMAFHFPRRSFVVVVAFFISFMMPGMTTRPVLAIFRASPWKLAHATFYGDETASETMGGACGYGNLFTNGYGVDTVALSSTLFNNGYACGTCFQIKCIQSKACYAHVAFTTVTATNLCPPNWAKPSNNGGWCNPPRVHFDMSKPAFMKIANWKAGIVPVVYRRVACGKRDGLRFTLQGNGYWLLVYVMNVGGGGDVSGMWVKGSKTGWIKMSHNWGASYQAFSTLVGQSLSFRVTSYTTKETITTWNVAPSNWRFGVTYKANLNFR 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42665910 42667187 + Maker00016100 Lcy6g2003 636447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2003 278 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576(InterPro)
Lcy6g2003 278 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576(InterPro)
Lcy6g2003 278 PRINTS Expansin/Lol pI family signature 166 182 IPR007118 GO:0005576(InterPro)
Lcy6g2003 278 PRINTS Expansin/Lol pI family signature 220 234 IPR007118 GO:0005576(InterPro)
Lcy6g2003 278 PRINTS Expansin/Lol pI family signature 51 66 IPR007118 GO:0005576(InterPro)
Lcy6g2003 278 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576(InterPro)
Lcy6g2003 278 PANTHER EXPANSIN-A15 36 273 IPR002963 GO:0009664(InterPro)
Lcy6g2003 278 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 70 183 IPR007112 -
Lcy6g2003 278 SMART dpbb_1 87 173 IPR007112 -
Lcy6g2003 278 Gene3D - 38 178 IPR036908 -
Lcy6g2003 278 Pfam Lytic transglycolase 87 173 IPR009009 -
Lcy6g2003 278 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 193 273 IPR007117 -
Lcy6g2003 278 SUPERFAMILY Barwin-like endoglucanases 44 201 IPR036908 -
Lcy6g2003 278 PRINTS Expansin signature 82 96 IPR002963 GO:0009664(InterPro)
Lcy6g2003 278 PRINTS Expansin signature 158 171 IPR002963 GO:0009664(InterPro)
Lcy6g2003 278 PRINTS Expansin signature 141 158 IPR002963 GO:0009664(InterPro)
Lcy6g2003 278 PRINTS Expansin signature 182 194 IPR002963 GO:0009664(InterPro)
Lcy6g2003 278 PRINTS Expansin signature 194 215 IPR002963 GO:0009664(InterPro)
Lcy6g2003 278 PRINTS Expansin signature 122 132 IPR002963 GO:0009664(InterPro)
Lcy6g2003 278 PRINTS Expansin signature 259 275 IPR002963 GO:0009664(InterPro)
Lcy6g2003 278 CDD DPBB_EXPA_N 51 178 - -
Lcy6g2003 278 SUPERFAMILY PHL pollen allergen 183 272 IPR036749 -
Lcy6g2003 278 Pfam Expansin C-terminal domain 185 262 IPR007117 -
Lcy6g2003 278 Gene3D - 183 278 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g2003 Lcy-Chr6:42665910 Lcy8g1801 Lcy-Chr8:44424220 3.19E-94 dispersed
Lcy12g1719 Lcy-Chr12:37764073 Lcy6g2003 Lcy-Chr6:42665910 1.30E-131 transposed
Lcy11g1146 Lcy-Chr11:33830296 Lcy6g2003 Lcy-Chr6:42665910 5.06E-14 wgd
Lcy4g1224 Lcy-Chr4:27626994 Lcy6g2003 Lcy-Chr6:42665910 1.07E-78 wgd
Lcy6g2003 Lcy-Chr6:42665910 Lcy7g1071 Lcy-Chr7:11465885 1.68E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2003 - - - 0.0