Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2022 ATGAGAAGGGTTCATCGGCTTTGTCTTTCTCATGCTCTTCTGTTCTTGATTCCATTTCTCGTCGGAATTTGCTCCGCCGCCACTGAGAAGGACATTTTGCTTCAGTTCAAAGATGCTGTTACAGAGGATCCGTTTGATTTCTTGAGAACTTGGGTCGCCGGCGAGGATCATTGCCGGAATTTCAGCGGCGTGTTCTGTAACACCGATGGGTTTGTGGAGAAGATTGTTCTATGGAACTCCAGCTTGGCTGGAACTTTGTCGCCTGCCTTGTCGGGATTGAAGTTTTTGAGGACTTTGACATTGTATGGAAATAGATTTACTGGTAATATTCCGATTGAATATGGCACCATTGTTACACTGTGGAAGCTGAACTTGAGCTCCAATGCTTTGTCGGGCTCGGTCCCGGAGTTCATCGGTGATTTGCCGAACATTCGGTTTCTGGATTTGTCTAGAAATGGCTTTACTGGGGAGATCCCTTCAGCTGTGTTCAAGAATTGTTTCAAAACTAGATTTGTTTCATTTTCTCATAACAGATTTTCAGGTATGATACCTTCAACAATTTTGAACTGTTTGAGCCTTGAAGGCTTTGATTTCTCAAATAATAATCTAAGTGGGAGCATTCCTTTGCAACTCTGTAACATTCAGAGATTAGAGTATGTTTCTGTGAGAAGTAATGCACTGTCTGGGAGTGTCCAAGGTCAGTTCTCTGCTTGCCAGAGCTTGAAACTTGTGGATCTGAGTAGCAATTTGTTCACCGGGTCACCGCCGTTCGAGGTTCTCAGATTCAAAAACATCACTTATTTTAATGTTTCATATAACAGTTTTAGTGGGGGAATTGCAGAGGTTGAGGGTTGTAGTGATAGTCTGGAAGTTTTTGATGTTTCATGGAATGGTTTGGATGGCGAGATCCCGTTGAGCATTGCAAAGTGTGGCAGTCTTAAAATCTTGGATTTGGAATCTAACAAGCTGGTTGGGAAGATCCCTGCTGACCTTGCAGATTTGAAAAAGCTTTTGGTGATTCGGTTGGGTTCTAATTCGATCACCGGGACGGTTCCAGCCGTTTTCGGGAACATCGAGCTACTTCAGGTTTTGAATTTGCACAGTCTCAAACTTGTTGGTGAGATACCTGATGATATAACCAGTTGCAGGTTTCTTCTTGAGCTGGATATTTCTGGCAATGCATTGGATGGGGGAATTCCTCAATCTCTTTATAACATGACATACCTTAAAATTCTTGATCTTCATGATAACCATCTGAACGGAAGCATTCCGTCGACGCTTGGGAGCCTCTCGAAACTACAGTTTCTCGATCTATCTCGAAACCTGCTATCTGGTTCGATACCTGCTACTCTTGAAAATCTCACATTGCTGCACCATTTCAATGTCTCTTTCAACAACCTTTCGGGCACCATACCTCCCGTGAAGACGATCCAAGATTTCGGGCCTTCTGCATTCTCAAACAATCCTTTGCTTTGTGGTGCTCCCTTGGATCCTTGCTCTGCAAATAACACCACTGGCACGACTTCCACATCGAAGAAGCCAAAGGTTCTTAGTCCATCTGCAATCATTGCAATCGTAGCAGCGGTCGTGATCCTGGTCGGGGTTTGTGTGATATCCATTTTGAACCTAATGGCTCGGACAAGGAAGGCGAGGAGCACCGAAATCATTGAGAGCACACCACTTGGTTCAACCGATTCAGGCGTCATAATTGGGAAGCTGGTTCTTTTCAGCAAAACTTTGCCATCAAAGTATGAAGACTGGGAGGCTGGCACCAAAGCTTTGCTCGACAAGGAATGTCTAATAGGGGGTGGCTCGATCGGCACCGTCTACAAGACAAGTTTCGAGGGCGGAGTCTCCATCGCTGTGAAGAAGCTGGAGACTCTAGGGAGGATCAGAAGCCAAGATGAGTTTGAGACTGAAATTGGACGTTTGGGAAACATTAAACACCAGAACTTAGTCGCTTTTCAGGGGTACTATTGGTCCTCATCAATGCAGTTGATTCTGTCTGAATTCGTCTCAAACGGCAACCTTTACGACAATCTACACGGTCTGAGTTATCCAGGCACCAGCACAGGCATTGGCAATACAGAGCTACATTGGTCTAGGAGATACCAAATTGCACTTGGAACAGCTAGAGCTCTTGCTTATCTTCACCATGATTGTAGGCCTCCAATTCTTCACCTCAACATAAAATCAACTAACATACTGTTAGACGAAAACTACGACGCCAAGTTATCCGATTATGGGTTGGGGAAGTTGCTTCCCGTTTTGGACAATTACATCTTAACCAAATACCATACCGCTGTAGGCTACGTCGCACCGGAGTTAGCACAAAGTTTGAGAGTAAGTGAAAAATGCGACGTCTATAGTTTTGGAGTGATTCTACTGGAGTTGGTAACAGGGAGGAAGCCAGTTGAGAGTCCAAGAGCAAACCAGGTAGTGATTTTGTGTGAATATGTAAGGGAGTTGTTGGAAAATGGTTCTGCTTCTGACTGTTTCGATCGAAACTTACGTGGCATTGCCGAAAACGAGCTCATCCAAGTGATGAAGTTGGGATTGATTTGTACATCCGAGATCCCTTCGAAGAGACCAAGCATGGCCGAGGTTGTTCAAGTTCTCGAGTCGATAAGAAACGGATTAGGATCGTAG 2649 44.62 MRRVHRLCLSHALLFLIPFLVGICSAATEKDILLQFKDAVTEDPFDFLRTWVAGEDHCRNFSGVFCNTDGFVEKIVLWNSSLAGTLSPALSGLKFLRTLTLYGNRFTGNIPIEYGTIVTLWKLNLSSNALSGSVPEFIGDLPNIRFLDLSRNGFTGEIPSAVFKNCFKTRFVSFSHNRFSGMIPSTILNCLSLEGFDFSNNNLSGSIPLQLCNIQRLEYVSVRSNALSGSVQGQFSACQSLKLVDLSSNLFTGSPPFEVLRFKNITYFNVSYNSFSGGIAEVEGCSDSLEVFDVSWNGLDGEIPLSIAKCGSLKILDLESNKLVGKIPADLADLKKLLVIRLGSNSITGTVPAVFGNIELLQVLNLHSLKLVGEIPDDITSCRFLLELDISGNALDGGIPQSLYNMTYLKILDLHDNHLNGSIPSTLGSLSKLQFLDLSRNLLSGSIPATLENLTLLHHFNVSFNNLSGTIPPVKTIQDFGPSAFSNNPLLCGAPLDPCSANNTTGTTSTSKKPKVLSPSAIIAIVAAVVILVGVCVISILNLMARTRKARSTEIIESTPLGSTDSGVIIGKLVLFSKTLPSKYEDWEAGTKALLDKECLIGGGSIGTVYKTSFEGGVSIAVKKLETLGRIRSQDEFETEIGRLGNIKHQNLVAFQGYYWSSSMQLILSEFVSNGNLYDNLHGLSYPGTSTGIGNTELHWSRRYQIALGTARALAYLHHDCRPPILHLNIKSTNILLDENYDAKLSDYGLGKLLPVLDNYILTKYHTAVGYVAPELAQSLRVSEKCDVYSFGVILLELVTGRKPVESPRANQVVILCEYVRELLENGSASDCFDRNLRGIAENELIQVMKLGLICTSEIPSKRPSMAEVVQVLESIRNGLGS 882
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 43123297 43127142 - Maker00016050 Lcy6g2022 636466
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2022 882 CDD STKc_IRAK 601 876 - -
Lcy6g2022 882 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Lcy6g2022 882 PANTHER UNNAMED PRODUCT 123 867 - -
Lcy6g2022 882 SUPERFAMILY L domain-like 263 498 - -
Lcy6g2022 882 FunFam Leucine-rich repeat receptor-like protein kinase TDR 253 501 - -
Lcy6g2022 882 SMART LRR_typ_2 430 454 IPR003591 -
Lcy6g2022 882 SMART LRR_typ_2 141 165 IPR003591 -
Lcy6g2022 882 SMART LRR_typ_2 334 357 IPR003591 -
Lcy6g2022 882 SMART LRR_typ_2 406 429 IPR003591 -
Lcy6g2022 882 SUPERFAMILY L domain-like 28 299 - -
Lcy6g2022 882 SUPERFAMILY Protein kinase-like (PK-like) 596 874 IPR011009 -
Lcy6g2022 882 Gene3D Transferase(Phosphotransferase) domain 1 672 880 - -
Lcy6g2022 882 ProSiteProfiles Protein kinase domain profile. 595 876 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g2022 882 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 164 252 - -
Lcy6g2022 882 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 26 163 - -
Lcy6g2022 882 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 672 882 - -
Lcy6g2022 882 Gene3D Ribonuclease Inhibitor 26 186 IPR032675 -
Lcy6g2022 882 Gene3D Ribonuclease Inhibitor 187 284 IPR032675 -
Lcy6g2022 882 Gene3D Ribonuclease Inhibitor 285 377 IPR032675 -
Lcy6g2022 882 Gene3D Ribonuclease Inhibitor 383 500 IPR032675 -
Lcy6g2022 882 FunFam Putative LRR receptor-like serine/threonine-protein kinase 572 671 - -
Lcy6g2022 882 Gene3D Phosphorylase Kinase; domain 1 571 671 - -
Lcy6g2022 882 Pfam Protein kinase domain 599 871 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g2022 882 Pfam Leucine Rich Repeat 385 406 IPR001611 GO:0005515(InterPro)
Lcy6g2022 882 Pfam Leucine Rich Repeat 120 141 IPR001611 GO:0005515(InterPro)
Lcy6g2022 882 Pfam Leucine Rich Repeat 409 430 IPR001611 GO:0005515(InterPro)
Lcy6g2022 882 Pfam Leucine Rich Repeat 432 454 IPR001611 GO:0005515(InterPro)
Lcy6g2022 882 Pfam Leucine Rich Repeat 192 213 IPR001611 GO:0005515(InterPro)
Lcy6g2022 882 Pfam Leucine Rich Repeat 288 310 IPR001611 GO:0005515(InterPro)
Lcy6g2022 882 Pfam Leucine Rich Repeat 312 334 IPR001611 GO:0005515(InterPro)
Lcy6g2022 882 Pfam Leucine Rich Repeat 143 162 IPR001611 GO:0005515(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g2022 Lcy-Chr6:43123297 Lcy12g1064 Lcy-Chr12:18498706 2.81E-56 dispersed
Lcy12g0901 Lcy-Chr12:13013602 Lcy6g2022 Lcy-Chr6:43123297 8.39E-50 wgd
Lcy6g2022 Lcy-Chr6:43123297 Lcy7g1082 Lcy-Chr7:11576919 4.66E-84 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66047 None None None None Lcy PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2022 - - - 0.0