Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy6g2022 | ATGAGAAGGGTTCATCGGCTTTGTCTTTCTCATGCTCTTCTGTTCTTGATTCCATTTCTCGTCGGAATTTGCTCCGCCGCCACTGAGAAGGACATTTTGCTTCAGTTCAAAGATGCTGTTACAGAGGATCCGTTTGATTTCTTGAGAACTTGGGTCGCCGGCGAGGATCATTGCCGGAATTTCAGCGGCGTGTTCTGTAACACCGATGGGTTTGTGGAGAAGATTGTTCTATGGAACTCCAGCTTGGCTGGAACTTTGTCGCCTGCCTTGTCGGGATTGAAGTTTTTGAGGACTTTGACATTGTATGGAAATAGATTTACTGGTAATATTCCGATTGAATATGGCACCATTGTTACACTGTGGAAGCTGAACTTGAGCTCCAATGCTTTGTCGGGCTCGGTCCCGGAGTTCATCGGTGATTTGCCGAACATTCGGTTTCTGGATTTGTCTAGAAATGGCTTTACTGGGGAGATCCCTTCAGCTGTGTTCAAGAATTGTTTCAAAACTAGATTTGTTTCATTTTCTCATAACAGATTTTCAGGTATGATACCTTCAACAATTTTGAACTGTTTGAGCCTTGAAGGCTTTGATTTCTCAAATAATAATCTAAGTGGGAGCATTCCTTTGCAACTCTGTAACATTCAGAGATTAGAGTATGTTTCTGTGAGAAGTAATGCACTGTCTGGGAGTGTCCAAGGTCAGTTCTCTGCTTGCCAGAGCTTGAAACTTGTGGATCTGAGTAGCAATTTGTTCACCGGGTCACCGCCGTTCGAGGTTCTCAGATTCAAAAACATCACTTATTTTAATGTTTCATATAACAGTTTTAGTGGGGGAATTGCAGAGGTTGAGGGTTGTAGTGATAGTCTGGAAGTTTTTGATGTTTCATGGAATGGTTTGGATGGCGAGATCCCGTTGAGCATTGCAAAGTGTGGCAGTCTTAAAATCTTGGATTTGGAATCTAACAAGCTGGTTGGGAAGATCCCTGCTGACCTTGCAGATTTGAAAAAGCTTTTGGTGATTCGGTTGGGTTCTAATTCGATCACCGGGACGGTTCCAGCCGTTTTCGGGAACATCGAGCTACTTCAGGTTTTGAATTTGCACAGTCTCAAACTTGTTGGTGAGATACCTGATGATATAACCAGTTGCAGGTTTCTTCTTGAGCTGGATATTTCTGGCAATGCATTGGATGGGGGAATTCCTCAATCTCTTTATAACATGACATACCTTAAAATTCTTGATCTTCATGATAACCATCTGAACGGAAGCATTCCGTCGACGCTTGGGAGCCTCTCGAAACTACAGTTTCTCGATCTATCTCGAAACCTGCTATCTGGTTCGATACCTGCTACTCTTGAAAATCTCACATTGCTGCACCATTTCAATGTCTCTTTCAACAACCTTTCGGGCACCATACCTCCCGTGAAGACGATCCAAGATTTCGGGCCTTCTGCATTCTCAAACAATCCTTTGCTTTGTGGTGCTCCCTTGGATCCTTGCTCTGCAAATAACACCACTGGCACGACTTCCACATCGAAGAAGCCAAAGGTTCTTAGTCCATCTGCAATCATTGCAATCGTAGCAGCGGTCGTGATCCTGGTCGGGGTTTGTGTGATATCCATTTTGAACCTAATGGCTCGGACAAGGAAGGCGAGGAGCACCGAAATCATTGAGAGCACACCACTTGGTTCAACCGATTCAGGCGTCATAATTGGGAAGCTGGTTCTTTTCAGCAAAACTTTGCCATCAAAGTATGAAGACTGGGAGGCTGGCACCAAAGCTTTGCTCGACAAGGAATGTCTAATAGGGGGTGGCTCGATCGGCACCGTCTACAAGACAAGTTTCGAGGGCGGAGTCTCCATCGCTGTGAAGAAGCTGGAGACTCTAGGGAGGATCAGAAGCCAAGATGAGTTTGAGACTGAAATTGGACGTTTGGGAAACATTAAACACCAGAACTTAGTCGCTTTTCAGGGGTACTATTGGTCCTCATCAATGCAGTTGATTCTGTCTGAATTCGTCTCAAACGGCAACCTTTACGACAATCTACACGGTCTGAGTTATCCAGGCACCAGCACAGGCATTGGCAATACAGAGCTACATTGGTCTAGGAGATACCAAATTGCACTTGGAACAGCTAGAGCTCTTGCTTATCTTCACCATGATTGTAGGCCTCCAATTCTTCACCTCAACATAAAATCAACTAACATACTGTTAGACGAAAACTACGACGCCAAGTTATCCGATTATGGGTTGGGGAAGTTGCTTCCCGTTTTGGACAATTACATCTTAACCAAATACCATACCGCTGTAGGCTACGTCGCACCGGAGTTAGCACAAAGTTTGAGAGTAAGTGAAAAATGCGACGTCTATAGTTTTGGAGTGATTCTACTGGAGTTGGTAACAGGGAGGAAGCCAGTTGAGAGTCCAAGAGCAAACCAGGTAGTGATTTTGTGTGAATATGTAAGGGAGTTGTTGGAAAATGGTTCTGCTTCTGACTGTTTCGATCGAAACTTACGTGGCATTGCCGAAAACGAGCTCATCCAAGTGATGAAGTTGGGATTGATTTGTACATCCGAGATCCCTTCGAAGAGACCAAGCATGGCCGAGGTTGTTCAAGTTCTCGAGTCGATAAGAAACGGATTAGGATCGTAG | 2649 | 44.62 | MRRVHRLCLSHALLFLIPFLVGICSAATEKDILLQFKDAVTEDPFDFLRTWVAGEDHCRNFSGVFCNTDGFVEKIVLWNSSLAGTLSPALSGLKFLRTLTLYGNRFTGNIPIEYGTIVTLWKLNLSSNALSGSVPEFIGDLPNIRFLDLSRNGFTGEIPSAVFKNCFKTRFVSFSHNRFSGMIPSTILNCLSLEGFDFSNNNLSGSIPLQLCNIQRLEYVSVRSNALSGSVQGQFSACQSLKLVDLSSNLFTGSPPFEVLRFKNITYFNVSYNSFSGGIAEVEGCSDSLEVFDVSWNGLDGEIPLSIAKCGSLKILDLESNKLVGKIPADLADLKKLLVIRLGSNSITGTVPAVFGNIELLQVLNLHSLKLVGEIPDDITSCRFLLELDISGNALDGGIPQSLYNMTYLKILDLHDNHLNGSIPSTLGSLSKLQFLDLSRNLLSGSIPATLENLTLLHHFNVSFNNLSGTIPPVKTIQDFGPSAFSNNPLLCGAPLDPCSANNTTGTTSTSKKPKVLSPSAIIAIVAAVVILVGVCVISILNLMARTRKARSTEIIESTPLGSTDSGVIIGKLVLFSKTLPSKYEDWEAGTKALLDKECLIGGGSIGTVYKTSFEGGVSIAVKKLETLGRIRSQDEFETEIGRLGNIKHQNLVAFQGYYWSSSMQLILSEFVSNGNLYDNLHGLSYPGTSTGIGNTELHWSRRYQIALGTARALAYLHHDCRPPILHLNIKSTNILLDENYDAKLSDYGLGKLLPVLDNYILTKYHTAVGYVAPELAQSLRVSEKCDVYSFGVILLELVTGRKPVESPRANQVVILCEYVRELLENGSASDCFDRNLRGIAENELIQVMKLGLICTSEIPSKRPSMAEVVQVLESIRNGLGS | 882 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 43123297 | 43127142 | - | Maker00016050 | Lcy6g2022 | 636466 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy6g2022 | 882 | CDD | STKc_IRAK | 601 | 876 | - | - | |
Lcy6g2022 | 882 | Pfam | Leucine rich repeat N-terminal domain | 27 | 67 | IPR013210 | - | |
Lcy6g2022 | 882 | PANTHER | UNNAMED PRODUCT | 123 | 867 | - | - | |
Lcy6g2022 | 882 | SUPERFAMILY | L domain-like | 263 | 498 | - | - | |
Lcy6g2022 | 882 | FunFam | Leucine-rich repeat receptor-like protein kinase TDR | 253 | 501 | - | - | |
Lcy6g2022 | 882 | SMART | LRR_typ_2 | 430 | 454 | IPR003591 | - | |
Lcy6g2022 | 882 | SMART | LRR_typ_2 | 141 | 165 | IPR003591 | - | |
Lcy6g2022 | 882 | SMART | LRR_typ_2 | 334 | 357 | IPR003591 | - | |
Lcy6g2022 | 882 | SMART | LRR_typ_2 | 406 | 429 | IPR003591 | - | |
Lcy6g2022 | 882 | SUPERFAMILY | L domain-like | 28 | 299 | - | - | |
Lcy6g2022 | 882 | SUPERFAMILY | Protein kinase-like (PK-like) | 596 | 874 | IPR011009 | - | |
Lcy6g2022 | 882 | Gene3D | Transferase(Phosphotransferase) domain 1 | 672 | 880 | - | - | |
Lcy6g2022 | 882 | ProSiteProfiles | Protein kinase domain profile. | 595 | 876 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy6g2022 | 882 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 164 | 252 | - | - | |
Lcy6g2022 | 882 | FunFam | Probable LRR receptor-like serine/threonine-protein kinase At1g12460 | 26 | 163 | - | - | |
Lcy6g2022 | 882 | FunFam | probable LRR receptor-like serine/threonine-protein kinase IRK | 672 | 882 | - | - | |
Lcy6g2022 | 882 | Gene3D | Ribonuclease Inhibitor | 26 | 186 | IPR032675 | - | |
Lcy6g2022 | 882 | Gene3D | Ribonuclease Inhibitor | 187 | 284 | IPR032675 | - | |
Lcy6g2022 | 882 | Gene3D | Ribonuclease Inhibitor | 285 | 377 | IPR032675 | - | |
Lcy6g2022 | 882 | Gene3D | Ribonuclease Inhibitor | 383 | 500 | IPR032675 | - | |
Lcy6g2022 | 882 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 572 | 671 | - | - | |
Lcy6g2022 | 882 | Gene3D | Phosphorylase Kinase; domain 1 | 571 | 671 | - | - | |
Lcy6g2022 | 882 | Pfam | Protein kinase domain | 599 | 871 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy6g2022 | 882 | Pfam | Leucine Rich Repeat | 385 | 406 | IPR001611 | GO:0005515(InterPro) | |
Lcy6g2022 | 882 | Pfam | Leucine Rich Repeat | 120 | 141 | IPR001611 | GO:0005515(InterPro) | |
Lcy6g2022 | 882 | Pfam | Leucine Rich Repeat | 409 | 430 | IPR001611 | GO:0005515(InterPro) | |
Lcy6g2022 | 882 | Pfam | Leucine Rich Repeat | 432 | 454 | IPR001611 | GO:0005515(InterPro) | |
Lcy6g2022 | 882 | Pfam | Leucine Rich Repeat | 192 | 213 | IPR001611 | GO:0005515(InterPro) | |
Lcy6g2022 | 882 | Pfam | Leucine Rich Repeat | 288 | 310 | IPR001611 | GO:0005515(InterPro) | |
Lcy6g2022 | 882 | Pfam | Leucine Rich Repeat | 312 | 334 | IPR001611 | GO:0005515(InterPro) | |
Lcy6g2022 | 882 | Pfam | Leucine Rich Repeat | 143 | 162 | IPR001611 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy6g2022 | Lcy-Chr6:43123297 | Lcy12g1064 | Lcy-Chr12:18498706 | 2.81E-56 | dispersed | |
Lcy12g0901 | Lcy-Chr12:13013602 | Lcy6g2022 | Lcy-Chr6:43123297 | 8.39E-50 | wgd | |
Lcy6g2022 | Lcy-Chr6:43123297 | Lcy7g1082 | Lcy-Chr7:11576919 | 4.66E-84 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66047 | None | None | None | None | Lcy | PK |
Pathway information
