Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2037 ATGGAGGGACGAGGAGGTGATGCCGGAAATGGGGTTACAGCGGCGGCCAGATCAGATCCTTCGCGGTCTGATACGGCAGCTCCGGCGCCGGAAGGTGGCGGTCCGGTGGGTTCTGGGGCGGCGGCCTCGGGGAAGAAGAAGAGGGGGAGGCCGAGGAAGTATGGGCCGGACGGGAAGTTGAATGTGGCGGCACTGTCGCCGAAGCCGATATCCGCGTCGGCTCCGGCGCCGGCGGCGGTGATCGATTTCTCGGCGGAGAAACGTGGGAAAGTCCGGCCGGCGAGCTCCTTGAGTAAATCTAAATATGAAGTGGAGAATTTAGGTGAATGGATACCTTGTTCTGTTGGTGCTAATTTCACACCCCATATCATCACTGTCAACACTGGTGAGGACGTTACAATGAAGGTTCTCTCTTTTTCCCAACAAGGGCCTCGAGCCATCTGCATTCTCTCCGCAAACGGCGTGATTTCGAGCGTCACGCTTCGTCAACCCGATTCCTCTGGAGGAACATTAACATATGAGGGTCGTTTCGAGATATTGTCGTTGTCGGGATCGTTCATGCCGAGCGAGAGTGCAGGAACAAGGAGTAGAACCGGTGGAATGAGCGTCTCCTTAGCAAGTCCAGACGGACGTGTCGTTGGTGGCGGAGTTGCTGGTTTGTTAGTAGCTGCTAGTCCTGTTCAGGTGGTAGTAGGAAGCTTTATATCTGGGAACCAGCATGAGCAAAAGCCGAAGAAGCCGAAACAGGACGTCGTATTACCGGTTTCTGCTCTTCCAATCTCCAGCACTGAACCGAAGTCATACACGACGACGACGACGACATCTTTTCGTGCTGAAACTTGGTCACCATTGGTTCCAGATTTGAGAAGTCAGCCAACTGATATTAATGTATCTTTAACCAGTGGTTAA 909 53.69 MEGRGGDAGNGVTAAARSDPSRSDTAAPAPEGGGPVGSGAAASGKKKRGRPRKYGPDGKLNVAALSPKPISASAPAPAAVIDFSAEKRGKVRPASSLSKSKYEVENLGEWIPCSVGANFTPHIITVNTGEDVTMKVLSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSESAGTRSRTGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFISGNQHEQKPKKPKQDVVLPVSALPISSTEPKSYTTTTTTSFRAETWSPLVPDLRSQPTDINVSLTSG 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43325648 43327937 + Maker00015812 Lcy6g2037 636481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2037 302 ProSiteProfiles PPC domain profile profile. 116 261 IPR005175 -
Lcy6g2037 302 FunFam AT-hook motif nuclear-localized protein 1-like 121 251 - -
Lcy6g2037 302 SUPERFAMILY AF0104/ALDC/Ptd012-like 118 239 - -
Lcy6g2037 302 Gene3D - 121 251 - -
Lcy6g2037 302 CDD DUF296 120 211 IPR005175 -
Lcy6g2037 302 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 24 267 IPR039605 GO:0003680(InterPro)
Lcy6g2037 302 MobiDBLite consensus disorder prediction 1 61 - -
Lcy6g2037 302 Pfam Plants and Prokaryotes Conserved (PCC) domain 121 234 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0428 Lcy-Chr10:9334920 Lcy6g2037 Lcy-Chr6:43325648 1.32E-91 dispersed
Lcy12g1748 Lcy-Chr12:38272087 Lcy6g2037 Lcy-Chr6:43325648 1.50E-125 dispersed
Lcy13g2276 Lcy-Chr13:41652746 Lcy6g2037 Lcy-Chr6:43325648 1.02E-57 dispersed
Lcy6g2037 Lcy-Chr6:43325648 Lcy9g2354 Lcy-Chr9:47824431 7.75E-62 dispersed
Lcy6g2037 Lcy-Chr6:43325648 Lcy9g0896 Lcy-Chr9:30102688 7.82E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2037 - - - 0.0