Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2054 ATGATAGCGTTCATTAGACTTCGGAATTTATCGTTCAACTTCCGAAACGAAACTGAACTAATTAGATGTTTTCATTCCGGAACCAAACTGCAATTCAGTTCTCCGGATTCTTCCTTGTCCACCGTTGCTATTTTCTGGGATTTGGATAATAAACCACCGAAATCCTTACCGCCTTACGAAGCTGCTGTTAAGCTGAAAGCTGCAGCGGCTTCCTTCGGCGTCGTTCGATACATGGTGGCGTATGCGAATCGGCATGCGTTTAGCTATGTGCCGCAAGTTGTTAGGGAGCAGAGAAGAGAGAGGAAGATGTTGAATCAATTGGAAAGTAAGGGTGTGATTAAATCGATTGAGCCGTATCTGTGCCGTGTTTGTGGGAGGAATTTTTATACGAATGAGAAGTTAGTGAATCATTTTAAGCAAATTCATGAGAGTGAGCATAAGAAGAGGTTGAATCAGATAGAATCTGCGAAAGGTAGTAGAAGAGTGAAGTTGCTCGCTAAGTATTCGATGAAAATACAGAAGTATAAGAATGCTGCCAGGGATGTTTTGACTCCAAAAGTGGGATATGGTTTAGCAGATGAGTTGAAGAGGGCAGGGTTTTTGGTGAAGACTGTTTCGAATAAGCCAGAAGCTGCTGATGTAGAATTGAGAAACGACATGGTCGAGATTATGGATAGGAGAAGAGCTGAGTGTTTGGTTCTTGTATCAGATGATTCAGATTTTGTGAATGTTTTGAAGGAGGCTAAATTGAGATGTCTCAGGACAGTTGTTGTAGGGGATGTTAATGATGGGCCATTGAAGAGAAATGCTGATACAGGGTTTTCTTGGAAGGAGATTTTAATGGGGAAGGCTAAGAAGGAGGCTGTGACTGTTGTGGGGAAATGGAAGGATCGAGATATTTTGAAGAGTTTGGAATGGACTTACAATCCTCAATTGGAGAAGAAAGTGTTTGGTTTGGATGATATTGGAGAGGATGAAGATGTTGAGGGTTCTGTTGAAGGGGGAAGTTGTGAGAATAGGCAAAATGATAACAGTGGTGCTTGGTGGGATCTCAGCTCTGATACTGAAACTAACTAA 1077 41.88 MIAFIRLRNLSFNFRNETELIRCFHSGTKLQFSSPDSSLSTVAIFWDLDNKPPKSLPPYEAAVKLKAAAASFGVVRYMVAYANRHAFSYVPQVVREQRRERKMLNQLESKGVIKSIEPYLCRVCGRNFYTNEKLVNHFKQIHESEHKKRLNQIESAKGSRRVKLLAKYSMKIQKYKNAARDVLTPKVGYGLADELKRAGFLVKTVSNKPEAADVELRNDMVEIMDRRRAECLVLVSDDSDFVNVLKEAKLRCLRTVVVGDVNDGPLKRNADTGFSWKEILMGKAKKEAVTVVGKWKDRDILKSLEWTYNPQLEKKVFGLDDIGEDEDVEGSVEGGSCENRQNDNSGAWWDLSSDTETN 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43621634 43622710 + Maker00015856 Lcy6g2054 636498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2054 358 SUPERFAMILY beta-beta-alpha zinc fingers 118 144 IPR036236 -
Lcy6g2054 358 MobiDBLite consensus disorder prediction 327 358 - -
Lcy6g2054 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 147 IPR013087 -
Lcy6g2054 358 CDD PIN_LabA-like 129 260 - -
Lcy6g2054 358 Pfam NYN domain 191 271 IPR021139 GO:0004540(InterPro)
Lcy6g2054 358 ProSitePatterns Zinc finger C2H2 type domain signature. 121 142 IPR013087 -
Lcy6g2054 358 Gene3D - 36 279 - -
Lcy6g2054 358 MobiDBLite consensus disorder prediction 335 358 - -
Lcy6g2054 358 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 35 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g2054 Lcy-Chr6:43621634 Lcy9g2082 Lcy-Chr9:45561492 1.80E-65 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20327 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2054 - - - 0.0