Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2096 ATGAGGGGTATTTCCTTTCACTTTCAGGGGAAGGGGGAGCTGGAAATTTCTGCCGCTTTTTCTTCTTCTTCTTCTCCGATTTGCTCTGGTTTTGCAGAAAAGTGGGTTAAGAAAGGAGACTTTCAGTTTCAACAGCAAGAACAAGACGAAGAAGAACAAGAAGAAGGGTTTTCTTATTTTGTTTTACCCAACAACGAACCCACTTCCGTTCTTCATATGAGAAGCCCCAGTCCTCCCACATCGGCTTCTACTCTCTCTTCTTCCTTTGGTGGGGGCGGTGGCGGTGGCGGTGGCTGTGTTCCTTCACTTCCGCCGGAGACTCCTGCTGTAGAGCCGCTCGCCGGAGCTGGGGTTGGGACTGCCATTTTTCCCGGTGGATTGGAGCGATGTGGGGTTGGATTGGAAGATTTGGAGAGTATGTGGTCGGAATCGGCTGGACCAGAACAGTCGTTTCTCCGTTGGATCGCCGGAGATGTTGTTGAAGATCCCAGTCTGGGGATTAAAGGTCTTTTGCAAAATGGGAATATACCCTTTGATTTGGATGGCAATGCCGGTATCGGAATCGTCGATCAGGGTTCCGAATTCGACCCCGGTGCTGCTGGTAATGTTCTTGCCAATATCAATCCTAATTTATCGTTTCCTCTTCCTGCTTGTACTGGGTTTTCTGATGTTAATGGTAATAATAAGGCTTTTAGCAGAAGCACTTGTGGGGTTGTTAATTACAAGAGTTCTAGTTTGGGGCTGAACAATCGCAGCCATGGAAATTTCAATGTTCAGAACCCTATCTTTAATGGGTCTGTTGAGAATCTTGTTGTTCCTGTTTCTGGTATGATTTACCCTCCGCAGCTTCAGCCATTTGAGAGCCCTGATGAGAAGCCTCAGAATTTGAATGCTCAGGTTTTGTTGAACCAGCATCAGCAGCCTCAGAATCCAAGCTTTTTTGTGCCATTGACATTTGGTCAACAGGAACAGCAGCTCCAGCCTCAACTGAAGAGGCACAATTCAAGTGGAGGGGTCGACCCGAATGGGCAGATCCCGAAAGTTCCGTTTATGGATCCAGGGAATGAGATTTTTCTGAGGAATCATCAGTTGCAGGTGCAGCAGCAACAGCAGCAGCAGCTTGGTTATCCACCGGGTTTGCAGTTTCTTCCTCAGCAGAAGGCAATGTCGCCGAAGCCGAAAGTTGTAGGGCTTGGCGACGAAATGGCGTATCACAATCCCCCACAGCAACAGCATCCGCAACATGCTTTGCTCGACCAGCTCTACAAGGCAGCAGAGCTGGTAGGGACTGGGAATTTCTCACTCGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCTGTTGGAAAGCCCCTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCTCTTCAATTGGTCCTCCTTATGAACAACCCAGTTAATCCTCCTCCACCTCGCTGCCCGACACCGGTTGATGTGATCTTCAAGATGGGTGCTTACAAGGTCTTTTCAGAAATCTCCCCGCTCATTCAGTTTGTGAATTTCACCTGCAACCAGGCACTGCTTGAGGCCCTCGATGACGTTGATCGAATTCACATTGTTGATTTCGATATTGGTTTCGGAGCTCAGTGGGCTTCTTTTATGCAGGAACTGTCCTTGAGGAACCGGGGTGCTCCATCGCTAAAAATCACTGCTTTTGCCTCTCCCTCCACTCACCATCCAATTGAACTCGGGCTGATGCGTGATAATCTCACTCAATTTGCTAATGACATTGGAATAAGTTTTGAGTTCGAAGTGGTTAACTTTGATTCTTTGAACCAGAACTCCTTTTCCTTGCCGTTTTCTCGAGCAAGCGAAAACGAGGCTATTGCAGTAAACTTCCCTCTATGGTCCTCATCAAATCAACCAGCAATGCTTCCGTCTCTCCTCCGGTTTATCAAGCAACTCTCACCGAAAATTGTGGTATCACTGGACCGAGGGTGTGATCGAAGTGACCTCCCATTTCCTCAGCATATGCTTCAGGCACTTCAATCCTACATTAACCTCCTGGAATCTCTGGATGCTATTAATATGAATTCGGATGCTGTGAACAAGATCGAAAGGTTTCTTTTGCAACCAAGAATTGAAAGCACTGTTCTGGGTCGGCTTCGAGCGCCTGAAAGAATGCCCCTTTGGAAGACACTCTTTGCCTCTGCCGGGTACACGCCAGTAACATTCAGCAACTTCACTGAAACTCAAGCAGAATGTGTAGCAAAGAGAACTTCTGTGAGGGGATTTCACGTCGAGAAACGCCAAGCTTCCCTAGTTTTATGCTGGCAGCGCCGGGAACTCATATCTGCTTCAGCTTGGAGGTGTTGA 2343 48.1 MRGISFHFQGKGELEISAAFSSSSSPICSGFAEKWVKKGDFQFQQQEQDEEEQEEGFSYFVLPNNEPTSVLHMRSPSPPTSASTLSSSFGGGGGGGGGCVPSLPPETPAVEPLAGAGVGTAIFPGGLERCGVGLEDLESMWSESAGPEQSFLRWIAGDVVEDPSLGIKGLLQNGNIPFDLDGNAGIGIVDQGSEFDPGAAGNVLANINPNLSFPLPACTGFSDVNGNNKAFSRSTCGVVNYKSSSLGLNNRSHGNFNVQNPIFNGSVENLVVPVSGMIYPPQLQPFESPDEKPQNLNAQVLLNQHQQPQNPSFFVPLTFGQQEQQLQPQLKRHNSSGGVDPNGQIPKVPFMDPGNEIFLRNHQLQVQQQQQQQLGYPPGLQFLPQQKAMSPKPKVVGLGDEMAYHNPPQQQHPQHALLDQLYKAAELVGTGNFSLAQGILARLNHQLSPVGKPLQRAAFYFKEALQLVLLMNNPVNPPPPRCPTPVDVIFKMGAYKVFSEISPLIQFVNFTCNQALLEALDDVDRIHIVDFDIGFGAQWASFMQELSLRNRGAPSLKITAFASPSTHHPIELGLMRDNLTQFANDIGISFEFEVVNFDSLNQNSFSLPFSRASENEAIAVNFPLWSSSNQPAMLPSLLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAINMNSDAVNKIERFLLQPRIESTVLGRLRAPERMPLWKTLFASAGYTPVTFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRRELISASAWRC 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44570179 44572521 + Maker00015838 Lcy6g2096 636540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2096 780 MobiDBLite consensus disorder prediction 71 108 - -
Lcy6g2096 780 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 386 778 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lcy6g2096 780 Pfam GRAS domain family 418 779 IPR005202 -
Lcy6g2096 780 ProSiteProfiles GRAS family profile. 408 779 IPR005202 -
Lcy6g2096 780 MobiDBLite consensus disorder prediction 71 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0948 Lcy-Chr6:9798003 Lcy6g2096 Lcy-Chr6:44570179 9.92E-73 dispersed
Lcy6g2096 Lcy-Chr6:44570179 Lcy1g1558 Lcy-Chr1:15478667 5.14E-06 dispersed
Lcy6g2096 Lcy-Chr6:44570179 Lcy13g0936 Lcy-Chr13:17423307 5.20E-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20331 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2096 K27747 - csv:101218630 1303.89