Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2126 ATGATTGGAGATAATTGGAGGGCCTTTCTTCTGACACTCTTTCACTTGTTTCCTTTCCATCATTATTCATTTTTAAGAAAACCATCTCTCTCTCTCTTTCTATATAATCCTCTCTTCTCCCCCTTCTCTTGGACCACAACTCTTCAACCCTTCTTCTTCATTCTCTCTCTACAAACCTCAAGAAATTTTGCAGAGCAATCCATGATGGCTACTGCCAAAGATGATACTCTTGGTTTGAGCCTTGGATTGGCCTTCGATTCTCATCGTTTGCAGCTCAATCTCATGCCGTCTTGGACTAATGACGCCTCCTCAGATCGGACATCGGGAACCGGCCGATCGTTGCTTCGAGGCATCGATGTGAACCGGATGCCGCCGTCGTCGGCGGCGGATTGCGAGGAGGAGGCGGCGATGTCGAGCCCTAACAGTACGGTTTCCAGCGTCAGTGGGAAGAGGAGTGAGCGGGAGGCCAACGGCGAGGATCTCGACGGCGATAGAGCTTGTTCTAGAGGGATAAGCGACGAGGAAGACGGGGAAACTTCGAGGAAAAAGCTTCGGCTCACGAAAGATCAGTCCGCCGTCTTGGAAGAGAGCTTCAAAGAGCACAACACTCTCAATCCTAAGCAAAAATTGGCGTTGGCTAAACAGTTGGGACTCCGCCCGAGGCAAGTCGAAGTCTGGTTCCAAAACCGAAGGGCAAGGACAAAGTTGAAGCAAACGGAAGTTGATTGCGAGTTTCTAAAGAGATGCTGCGAGAATCTGACGGAGGAAAACAGACGGTTGCAAAAAGAAGTCCAAGAACTGAGAGCACTGAAACTTTCCCCTCAGTTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCATCATGTGAGCGGGTGGCGGTCCCACCAGCCACGTCAGCCCCAGCTACCATCCCCAGAATGGGCCAGGCCCAGGCCCAACACGCTCGGCCCATCCACATCAACCCGTGGGCCTCCTCCATCCCGGCCCGGCCCTTCAACGCCCTGCACCCTCGCTCGTAA 1029 52.87 MIGDNWRAFLLTLFHLFPFHHYSFLRKPSLSLFLYNPLFSPFSWTTTLQPFFFILSLQTSRNFAEQSMMATAKDDTLGLSLGLAFDSHRLQLNLMPSWTNDASSDRTSGTGRSLLRGIDVNRMPPSSAADCEEEAAMSSPNSTVSSVSGKRSEREANGEDLDGDRACSRGISDEEDGETSRKKLRLTKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPATSAPATIPRMGQAQAQHARPIHINPWASSIPARPFNALHPRS 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45004693 45006901 + Maker00016070 Lcy6g2126 636570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2126 342 SMART HOX_1 179 241 IPR001356 GO:0003677(InterPro)
Lcy6g2126 342 CDD homeodomain 181 238 IPR001356 GO:0003677(InterPro)
Lcy6g2126 342 SUPERFAMILY Homeodomain-like 171 238 IPR009057 -
Lcy6g2126 342 Gene3D - 187 233 - -
Lcy6g2126 342 Pfam Homeodomain 181 235 IPR001356 GO:0003677(InterPro)
Lcy6g2126 342 MobiDBLite consensus disorder prediction 152 183 - -
Lcy6g2126 342 FunFam Homeobox-leucine zipper protein 18 168 242 - -
Lcy6g2126 342 Pfam HD-ZIP protein N terminus 72 155 IPR006712 GO:0005634(InterPro)
Lcy6g2126 342 ProSitePatterns 'Homeobox' domain signature. 212 235 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy6g2126 342 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 72 313 IPR050762 -
Lcy6g2126 342 Coils Coil 236 273 - -
Lcy6g2126 342 MobiDBLite consensus disorder prediction 136 151 - -
Lcy6g2126 342 CDD bZIP 230 269 - -
Lcy6g2126 342 ProSiteProfiles 'Homeobox' domain profile. 177 237 IPR001356 GO:0003677(InterPro)
Lcy6g2126 342 PRINTS Lambda-repressor HTH signature 208 217 IPR000047 GO:0003677(InterPro)
Lcy6g2126 342 PRINTS Lambda-repressor HTH signature 217 233 IPR000047 GO:0003677(InterPro)
Lcy6g2126 342 SMART halz 237 280 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g2126 342 Pfam Homeobox associated leucine zipper 237 271 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g2126 342 MobiDBLite consensus disorder prediction 100 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2096 Lcy-Chr11:44455520 Lcy6g2126 Lcy-Chr6:45004693 2.99E-80 dispersed
Lcy5g0586 Lcy-Chr5:6679979 Lcy6g2126 Lcy-Chr6:45004693 1.78E-67 dispersed
Lcy6g2126 Lcy-Chr6:45004693 Lcy9g1997 Lcy-Chr9:44836583 8.39E-48 dispersed
Lcy6g2126 Lcy-Chr6:45004693 Lcy1g0879 Lcy-Chr1:7567121 8.86E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20335 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2126 K09338 - csv:101223208 446.047