Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2137 ATGATGTACGGACAGAGTAATAGCTGCGAATCGGATTTTGTTCTTCTCGAGTCCATACGCCGCCATTTGTTGGGTGATTCCGACGCTCTCCGATGTGGGAATTTCGCCCTCGCCGGATCCGCCGCCCCGGTTTTCTGCCGCAGCTCCAGTTTCGGCAGCTTGTACCCTTGTTTGACTGACAATTGGGGCGATTTGCCTCTCAAAGAGGATGATTCCGAAGACATGGTCCTCGCCGGAGTCCTCCGCGACGCCGTCCGGGTCGGTTGGGTTCCCTCCCTCGGCTCATCGCCGCCGGAGACTTTCAATTTCGATTTCTCCGACGTCAAGCCGGAGCCGGAGATTCTCCCGCCGGTGAACATCTTGCCGGAAGTGATGGAGACGAAGGTGGCGGTGACGGCGCCGGCGCCGGCGCCGGCGGTGGTTCCGGCGAAGGGGAAGCATTACCGGGGAGTCCGGCAGCGGCCGTGGGGCAAGTTCGCGGCGGAGATCCGAGACCCGGCGAAAAACGGGGCTCGGGTTTGGCTCGGGACGTTTGAGACGGCGGAGGATGCGGCTCTGGCCTATGACCGCGCCGCTTATCGGATGCGCGGCTCTAAAGCTCTTCTCAATTTTCCGCTTCGGGTTAATTCGGGTGAACCCGACCCGGTTAGAGTGACGTCGAAGCGGTCGTCACCCCGATCGTCACCGGAGCCTACTTCGTCGTTATCGTCGGTGGAGAGTGGGTCCCCTAAGCGGCGGAAGAAGGCGGACGGCTCGGCGGTGGCGGTGGCGGTGGCTCAAGCTGCACCGGAGTTGATACAATTGGTGGTGGGGTCCAATGCAATGCAAGTGGAAGCTGACGTGGCAAAGTGTACAAGTGGCGAGCAATGA 870 61.15 MMYGQSNSCESDFVLLESIRRHLLGDSDALRCGNFALAGSAAPVFCRSSSFGSLYPCLTDNWGDLPLKEDDSEDMVLAGVLRDAVRVGWVPSLGSSPPETFNFDFSDVKPEPEILPPVNILPEVMETKVAVTAPAPAPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSLSSVESGSPKRRKKADGSAVAVAVAQAAPELIQLVVGSNAMQVEADVAKCTSGEQ 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45213564 45214433 + Maker00021179 Lcy6g2137 636581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2137 289 PRINTS Ethylene responsive element binding protein signature 171 187 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g2137 289 PRINTS Ethylene responsive element binding protein signature 148 159 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g2137 289 MobiDBLite consensus disorder prediction 211 253 - -
Lcy6g2137 289 FunFam Ethylene-responsive transcription factor 2 146 206 - -
Lcy6g2137 289 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g2137 289 MobiDBLite consensus disorder prediction 216 240 - -
Lcy6g2137 289 SMART rav1_2 147 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g2137 289 PANTHER DNA-BINDING DOMAIN 132 240 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Lcy6g2137 289 Pfam AP2 domain 147 198 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g2137 289 CDD AP2 146 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g2137 289 Gene3D AP2/ERF domain 146 208 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g2137 289 SUPERFAMILY DNA-binding domain 147 207 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2140 Lcy-Chr11:44930745 Lcy6g2137 Lcy-Chr6:45213564 8.56E-26 dispersed
Lcy12g1863 Lcy-Chr12:39804741 Lcy6g2137 Lcy-Chr6:45213564 8.70E-101 dispersed
Lcy1g0298 Lcy-Chr1:2661647 Lcy6g2137 Lcy-Chr6:45213564 6.22E-30 dispersed
Lcy5g0745 Lcy-Chr5:10704687 Lcy6g2137 Lcy-Chr6:45213564 7.74E-25 dispersed
Lcy6g0308 Lcy-Chr6:2917592 Lcy6g2137 Lcy-Chr6:45213564 1.87E-42 dispersed
Lcy6g2137 Lcy-Chr6:45213564 Lcy9g0587 Lcy-Chr9:19221192 2.25E-22 dispersed
Lcy6g2135 Lcy-Chr6:45171207 Lcy6g2137 Lcy-Chr6:45213564 2.41E-28 proximal
Lcy12g1588 Lcy-Chr12:35957022 Lcy6g2137 Lcy-Chr6:45213564 2.55E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20337 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2137 K09286 - csv:101203663 408.297