Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2205 ATGGGAAGCGGAGTCTCCAGCCTCTTCTCGTGCCTCAAGCCGGAGACTCGCCCCGCCGCCCTTCCCGCCGACAATCCCGACCTCCTCTTCTCCGCCTCCGACCCTCTCGACGAAACCCTAGGCCACTCCTTCTGCTACGTCCGCTCTTCCAACCGCTTCCTCTCTCCCTCTCATTCCGATCGCTTTCTTTCCCCTTCTCAGTCCCTCCGTTTTTCCCCTCCTCACGAACCTCCGCTCGGGACCAGGACTAGAACTGGCCCGCCGGAGACTGCCTTCAAGGCCATCTCCGGCGCTTCTGTAAGTGCCAACAGTTCTATTCCCAGATCTGTTCTTATGCTCGATGCTGTTTACGACGATGCCACTGACACTGCGCTTGGGGCTTGCGGTGGTGGCTGTGGAGTCAGAGGGAGTATTTTGAATGGCTTTGAGAGTACTTCTTCTTTTACTGCTCTTCCGCTTCAGCCCGTGCCGAGAGGCGGGACTGAGCCGTTGGAGCGGGGTGGCTTCTTTCTCTCTGGTCCAATTGAGCGTGGGGCGCTTTCTGGTCCTCTTGATGCGAATGTTGATGGTGCTGGTGCTGCTGTTGCTGGCGCTGCTGCTGGAGGCGGCGGTGGGAGAGTCCATTTCTCGGCTCCGCTTGGTGGGATGTACGTGAAGAAGAAGAGGAAGAAGGGCATTTCGGGGTTTAGGAAGGCGTTTACGCGGAATTTTTCGGATAAGCGGCCGTGGGTGGTGCCGGTGTTGAATTTCGTTGGCCGGAAGGAGAGCTCGACGGCGGGAGATGAGCCGGAGGTGAGGAATGAGAGTGATGTTCAATGGGCGCTTGGGAAGGCGGGGGAGGATCGGGTACATGTGGTTGTATCGGAAGAGCAAGGGTGGTTGTTTGTTGGAATTTATGATGGGTTTAATGGCCCTGATGCACCTGAATTCTTGATGGGGAATCTCTATAGAGCAGTCTTCAATGAGCTTCAGGGATTGTTCTGGGAAATTGATGATAGTGAGGAGGCTGCTGCTAATGTGGTTGCAGAGAGTACAGTCATTGTGAATGAAACTAATGCTGACCCGTCTTCCAGAGCCTCTGGTCAAACGGTTGAAACTAATGGGAATGTTTCAGTAGTTGGAAATGAAGTGGAAGCAGAACAACCGGCTGCTGATCGAGGATCGGTTAAGAGGGTTACGTTTCAACCCGAGGATGGATCGGAGAACAGGCGGAGGCGACGGCTGTGGGAGTATTTAGCGGAGGACGATGCACAGGACGGACTTGATCTTTCGGGTTCAGATAGATTTGCGTTTTCAGTTGATGATGCGCTTAGTGTAAATAGTGCAGGTTCAGTAGCTGGTAGAAGGTGGCTGTTATTGTCCAAGTTGAAACAAGGGTTGTCAAAGCATAAGGAGGGTCATGCTAAGACTTTGTTCCCGTGGAAGTATGGTTTGGGAGATAAAGAGAAGGTTGAGGCCGAGAATAGGGTGGAGGAGACATCTTATCGAAGTGGTAAGAGGAGAAAGGAAGGTTTAATTGATCACGAGTTGGTGTTGGGGGCATTGTCACGGGCTCTTGAGATAACTGAATTAGCATATTTGGATATGACAGATAAGTTGCTCGATTCGAATCCAGAGCTTGCTTTGATGGGTTCTTGCTTGCTGGTTGTGTTAATGAGGGATGAAGATGTGTATGTAATGAATGTGGGTGACAGCCGTGCTATTGTTGCACAGTATGAGCAACAAGAAGTTGGCCCAAGTCAAGACTTGAAAGTGGAGGGAGACAAAAGAACAGGCATGGAGGGTATAATTGAGGAGTCAACAGCAATGGGTGAAGGGAAAATAACTCAAACGAACCAACCTTCGGCTCAGACAACAAGATTAACTGCATTGCAGCTATCCACCGATCATAGCACGAGCATTGAAGAGGAAGTAAGAAGAATAAAGAGTGAGCACCCAGATGACAAACAATGCATTGTCAATGATAGAGTGAAGGGCCGTCTAAAGGTTACGAGGGCATTTGGTGCAGGATTTTTGAAACAGCCAAAGTTGAATGATGCATTATTGGAAATGTTTAGGAATGAGTATATCGGTACTGCACCATATTTATCATGCATGCCTTCTCTTCGTCACCATAGACTCTGCCCCACAGATCAATTCATCGTGCTCTCATCTGATGGGCTGTATCAATATCTAACCAATGAAGAAGTGGTTTCTTATGTTGAGAACTTTATGGAGAAGTTCCCAGATGGAGACCCTGCACAGCACTTGATAGAGGAGCTTCTTTGCCGTGCGGCTAGAAAAGCAGGAATGGATTTTCATGAATTGTTGGACATCCCACAGGGGGACCGGAGGAAGTATCATGATGATGTTACTGTTATGGTCATTTCACTTGAAGGAAGAATCTGGAAATCCTCAGGAAAATATCTTTGA 2412 49.54 MGSGVSSLFSCLKPETRPAALPADNPDLLFSASDPLDETLGHSFCYVRSSNRFLSPSHSDRFLSPSQSLRFSPPHEPPLGTRTRTGPPETAFKAISGASVSANSSIPRSVLMLDAVYDDATDTALGACGGGCGVRGSILNGFESTSSFTALPLQPVPRGGTEPLERGGFFLSGPIERGALSGPLDANVDGAGAAVAGAAAGGGGGRVHFSAPLGGMYVKKKRKKGISGFRKAFTRNFSDKRPWVVPVLNFVGRKESSTAGDEPEVRNESDVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGNLYRAVFNELQGLFWEIDDSEEAAANVVAESTVIVNETNADPSSRASGQTVETNGNVSVVGNEVEAEQPAADRGSVKRVTFQPEDGSENRRRRRLWEYLAEDDAQDGLDLSGSDRFAFSVDDALSVNSAGSVAGRRWLLLSKLKQGLSKHKEGHAKTLFPWKYGLGDKEKVEAENRVEETSYRSGKRRKEGLIDHELVLGALSRALEITELAYLDMTDKLLDSNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYEQQEVGPSQDLKVEGDKRTGMEGIIEESTAMGEGKITQTNQPSAQTTRLTALQLSTDHSTSIEEEVRRIKSEHPDDKQCIVNDRVKGRLKVTRAFGAGFLKQPKLNDALLEMFRNEYIGTAPYLSCMPSLRHHRLCPTDQFIVLSSDGLYQYLTNEEVVSYVENFMEKFPDGDPAQHLIEELLCRAARKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYL 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46334184 46343812 + Maker00021227 Lcy6g2205 636649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2205 803 CDD PP2Cc 502 791 IPR001932 -
Lcy6g2205 803 SMART PP2C_4 264 789 IPR001932 -
Lcy6g2205 803 SUPERFAMILY PP2C-like 276 792 IPR036457 -
Lcy6g2205 803 ProSiteProfiles PPM-type phosphatase domain profile. 264 791 IPR001932 -
Lcy6g2205 803 Gene3D - 249 798 IPR036457 -
Lcy6g2205 803 Pfam Protein phosphatase 2C 624 754 IPR001932 -
Lcy6g2205 803 Pfam Protein phosphatase 2C 522 576 IPR001932 -
Lcy6g2205 803 PANTHER PROTEIN PHOSPHATASE 2C 272 791 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Lcy6g2205 803 MobiDBLite consensus disorder prediction 64 89 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1418 Lcy-Chr11:38014553 Lcy6g2205 Lcy-Chr6:46334184 4.87E-59 dispersed
Lcy6g1723 Lcy-Chr6:33650994 Lcy6g2205 Lcy-Chr6:46334184 1.21E-10 dispersed
Lcy6g2205 Lcy-Chr6:46334184 Lcy8g1809 Lcy-Chr8:44492648 8.96E-103 dispersed
Lcy6g2205 Lcy-Chr6:46334184 Lcy1g1438 Lcy-Chr1:13958390 7.60E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2205 - - - 0.0