Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2215 ATGGCTGGATTGGATTTAGGAAGTCGATATCTAACTCATCTTCAGACGTCCGTCGATGATCCGGCAAATCGCGGCGGTCATTTCTCCGCCGGCGACCACGAAGACGACGACGATCCCAACCAAGCCCTCGGCGGCCCCGGAGACGTCGTCGGCCGCCGCCCCCGCGGCCGGCCACCGGGTTCCAAGAACAAGCCGAAGCCGCCGGTCATCATCACCCGCGAGAGCGCCAACACGCTGCGTGTCCACATCTTAGAGGTCGGCAGCGGCTGCGACGTCTTCGACTGCATCGCCACCTACGCCCGGCGGCGGCAGCGTGGGATCTGTATTTTGAGCGGCAGCGGCAACGTCACCAACGTCGGACTCCGCCAGCCCGCGGCGGCCGGCGCCGTCTTGACCCTTCACGGGAGGTTCGAGATTTTGTCGCTCTCCGGATCGTTCCTCCCGCCGCCAGCTCCGCCCGGCGCCACCAGTTTGACGATATTTTTGGCTGGCGGCCAGGGGCAGGTCGTCGGCGGGACGGTGGCTGGAGAATTAACGGCGGCCGGACCGGTGATTCTGATTGCAGCTTCGTTTACTAATGTGGCGTATGAGAGATTACCACTGGATGAGGAGGATCAGCAGCAAGCTCCGGGGGCCGCCACCGCCTGTGGCGGCGGCGGCGGAGTGGGGAACAACAACAACAACCACCCATTTCAAGACCCATCAAATTCAGGACTTCCATTCTTGAATTTGCCACTTCATATGCAAAATGTTCAGCTTCCACCTTTCTGA 771 61.61 MAGLDLGSRYLTHLQTSVDDPANRGGHFSAGDHEDDDDPNQALGGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDVFDCIATYARRRQRGICILSGSGNVTNVGLRQPAAAGAVLTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQAPGAATACGGGGGVGNNNNNHPFQDPSNSGLPFLNLPLHMQNVQLPPF 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46493877 46494647 + Maker00021261 Lcy6g2215 636659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2215 256 ProSiteProfiles PPC domain profile profile. 76 212 IPR005175 -
Lcy6g2215 256 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 206 - -
Lcy6g2215 256 CDD DUF296 80 191 IPR005175 -
Lcy6g2215 256 MobiDBLite consensus disorder prediction 15 70 - -
Lcy6g2215 256 MobiDBLite consensus disorder prediction 220 238 - -
Lcy6g2215 256 Gene3D - 79 209 - -
Lcy6g2215 256 MobiDBLite consensus disorder prediction 204 238 - -
Lcy6g2215 256 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 192 IPR005175 -
Lcy6g2215 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 245 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy6g2215 256 MobiDBLite consensus disorder prediction 26 40 - -
Lcy6g2215 256 FunFam AT-hook motif nuclear-localized protein 79 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0544 Lcy-Chr13:6867866 Lcy6g2215 Lcy-Chr6:46493877 3.51E-94 dispersed
Lcy6g2215 Lcy-Chr6:46493877 Lcy7g0904 Lcy-Chr7:9115055 1.18E-71 dispersed
Lcy11g1856 Lcy-Chr11:42349531 Lcy6g2215 Lcy-Chr6:46493877 2.18E-98 wgd
Lcy12g1939 Lcy-Chr12:40759154 Lcy6g2215 Lcy-Chr6:46493877 2.14E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2215 - - - 0.0