Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2225 ATGACGGATTATCGTTTATCCACGATGAATCTCTGGACCGACGAGAACGCGTCGGTCATGGACGCTTTCATGAACTCCGATCTCTCCTCTTACTGGGCTCCATCGGCGGCCTCCTCTCACTCTCTCCACCACCCACCGCCGCCGCAGTCCTCCGCCTCCACCTCCACTCCGCCGCCGGACCCGCCCAAGTCACTCGCCGTCTTCAACCAGGAGACTCTGCAGCAGCGGCTCCAGGCGCTGATCGACGGAGCTAGGGAGAGCTGGACCTACGCGATTTTCTGGCAGTCGTCGTATGATTATTCCGGCGGGTCGGTTTTGGGGTGGGGAGATGGGTATTACAAAGGGGAGGAGGATAAAGGGAAGGGAAAAGCGAAAATGGTCTCGTCGGCGGCGGAACAGGCTCACCGGAAGAAGGTGCTCCGGGAGCTTAACTCTTTGATTTCCGGGTCAGCCGCCGGGCCGGATGATGCGGTGGATGAGGAGGTTACGGACACGGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCATTTGTCAATGGAGTTGGGTTGCCGAGTCAGGCGTTTTTTAGCTCGACGCCGATTTGGATCTCCGGCGCCGACCGGCTGTCGGCGTCGTCCTGTGATCGGGCCAGACAGGGGAGGGTTTTCGGGTTGCAGACGATGGTGTGTATTCCGTCGCCGAACGGAGTTGTGGAAATGGGTTCGACGGAATTGATTCATCGAACTTCAGATTTGATGAACAAGGTCAAGATTCTGTTCAATTTCAACAATCTCGAAACGGGTTCTTGGCAATCGGGAACCACCGCCACCGCCGCCGCATCCGCTGCCGACGAAGGGGAAAACGACCCGTCGTCGTTGTGGATCAGTGAGCCGTCGAGCACCATCGAGATGAAGGATTCGATTACCACCACCGTCCCTTCCTCTGGCGCTCCGGCGAAGCCAATCCATTCGGAAAATCCCAGTTCGAGCAGCTTAACGGAAAATCTCAGCGCAATTCAACAACCCTCCCATCAAAAACAGAGCCAAAGCTTCTTGAATTTCTCCGATTACGGCTTCGAATCGAACCCCTCAAAGACCACCGCCGCGACCACCGCCACCACCACCACCACCACCCCGTCATTCAAGCCGGAATCCGGCGGGATGCTGAACTTCGGCAACGGCAGTCTCTTCTCCGGCCACTCACAGTACATAACAGAGGAACAGAACGAGAAAAAGAGATCCCCTGCTTCCCGGAGCAGCAACGACGAAGGGATCCTCTCTTTCACCTCCGGCGTGATCTTACCCTCCTCCGGCAAGGTAAAATCCGGCGACTCCGACCACTCAGATCTCGAAGCCTCCATGATCCGAGAAGTCGACAGCTGCACCAAACCATTAGAACCCGAAAAACGACCACGAAAACGAGGGCGAAAACCGGCGAACGGAAGAGAAGAGCCATTGAATCACGTCGAAGCAGAGAGGCAACGGCGGGAGAAACTAAACCAGAAATTCTACGCTCTCCGGGCGGTGGTTCCGAACGTATCGAAAATGGACAAGGCGTCGCTGCTCGGCGACGCCGTTTCATACATCAACGAGCTGAAATCGAAGCTCCAAATCGCGGAATCGGAGAAGACGGAGATGGGGAAACAGCTGGAGTTTGTGAAGAAGGACATGGGAGGGAAAGATAATCTGGGAAACTACACGAACCCCATCGATCAAGATCTGAAAATCGGGAACAGAAAGGCGATGGAGATCGAGATCGACGTGAAAATCATGGGTTGGGACGCGATGATCAGAATCCAGTGCAGTAAAAAGAATCACCCGGCGGCGAGGTTGATGACGGCGTTGAAGGATTTGGATTTGGAAATGGTTCACGCCAGCGTTTCTGTGGTGAACGATCTGATGATTCAACAGGCAGCCGTGAAGATGGGAAGCAGATTCTACACACAGGAGCAGCTGAAAATGGCGCTCGTCGCCCGCGTCGCCGGTGGCGGCCATGGAATGATGTAG 1986 55.34 MTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSAASSHSLHHPPPPQSSASTSTPPPDPPKSLAVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGGSVLGWGDGYYKGEEDKGKGKAKMVSSAAEQAHRKKVLRELNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFVNGVGLPSQAFFSSTPIWISGADRLSASSCDRARQGRVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETGSWQSGTTATAAASAADEGENDPSSLWISEPSSTIEMKDSITTTVPSSGAPAKPIHSENPSSSSLTENLSAIQQPSHQKQSQSFLNFSDYGFESNPSKTTAATTATTTTTTPSFKPESGGMLNFGNGSLFSGHSQYITEEQNEKKRSPASRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASMIREVDSCTKPLEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQIAESEKTEMGKQLEFVKKDMGGKDNLGNYTNPIDQDLKIGNRKAMEIEIDVKIMGWDAMIRIQCSKKNHPAARLMTALKDLDLEMVHASVSVVNDLMIQQAAVKMGSRFYTQEQLKMALVARVAGGGHGMM 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46675617 46677602 - Maker00021135 Lcy6g2225 636669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2225 661 MobiDBLite consensus disorder prediction 36 63 - -
Lcy6g2225 661 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 73 253 IPR025610 -
Lcy6g2225 661 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 479 543 IPR036638 GO:0046983(InterPro)
Lcy6g2225 661 Pfam Plant bHLH transcription factor, ACT-like domain 579 648 IPR054502 -
Lcy6g2225 661 MobiDBLite consensus disorder prediction 269 342 - -
Lcy6g2225 661 MobiDBLite consensus disorder prediction 356 377 - -
Lcy6g2225 661 MobiDBLite consensus disorder prediction 356 387 - -
Lcy6g2225 661 Gene3D - 475 551 IPR036638 GO:0046983(InterPro)
Lcy6g2225 661 MobiDBLite consensus disorder prediction 446 486 - -
Lcy6g2225 661 PANTHER MYC 60 652 IPR045084 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Lcy6g2225 661 MobiDBLite consensus disorder prediction 285 342 - -
Lcy6g2225 661 FunFam Transcription factor bHLH13 469 543 - -
Lcy6g2225 661 Pfam Helix-loop-helix DNA-binding domain 480 526 IPR011598 GO:0046983(InterPro)
Lcy6g2225 661 CDD bHLH_AtAIB_like 473 548 - -
Lcy6g2225 661 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 476 525 IPR011598 GO:0046983(InterPro)
Lcy6g2225 661 SMART finulus 482 531 IPR011598 GO:0046983(InterPro)
Lcy6g2225 661 MobiDBLite consensus disorder prediction 398 417 - -
Lcy6g2225 661 Coils Coil 522 542 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2140 Lcy-Chr12:42672920 Lcy6g2225 Lcy-Chr6:46675617 5.97E-31 dispersed
Lcy4g0851 Lcy-Chr4:11756511 Lcy6g2225 Lcy-Chr6:46675617 1.32E-26 dispersed
Lcy4g1104 Lcy-Chr4:21769977 Lcy6g2225 Lcy-Chr6:46675617 3.32E-61 dispersed
Lcy4g1409 Lcy-Chr4:34851813 Lcy6g2225 Lcy-Chr6:46675617 7.78E-30 dispersed
Lcy6g1087 Lcy-Chr6:12171701 Lcy6g2225 Lcy-Chr6:46675617 1.34E-15 dispersed
Lcy6g2225 Lcy-Chr6:46675617 Lcy9g0152 Lcy-Chr9:3319542 2.77E-88 dispersed
Lcy11g1771 Lcy-Chr11:41518815 Lcy6g2225 Lcy-Chr6:46675617 4.48E-12 transposed
Lcy12g2203 Lcy-Chr12:43272674 Lcy6g2225 Lcy-Chr6:46675617 2.06E-17 transposed
Lcy12g1947 Lcy-Chr12:40825210 Lcy6g2225 Lcy-Chr6:46675617 4.94E-253 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20342 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2225 K13422 - csv:101205372 1093.95