Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2240 ATGGTGGGTTTTCTCTTCTTCTCCACTATAAAGTTTCTTTCCCTTTTCCCACCACTTTCCCTCTCTGCAAATTCAGCCATCAGGGGTTTTCTTCTTTTCATCTCTGTTTCTTCTGTTCTATTTCAGCGCAGTCAGATCTTTGCTGCCTATAAAGCTGGAACGAAGTTCAGCTCTGTAATTTTTGCTGCTGTTGCTGTTTATTTGAGAGGTGTTTTAGGAGATCTTATAATGGTTTCGAGGTCTTATTCTAACTTGTTAGAGCTTGCTTCTGGTGGTTGTTCTCCAACTTTTGGCCTTGGCCGAGAGAAGAGGAGGCTTCCTAGAGTGGCCACTGTGGCTGGAGTCTTGTCTGAGCTTGATGATGATAGCTGCAACAGTACTGGCTCGGATGCCCCTTCGTCAGTAGCGCAAGACCGGATGATTATTGTCGGGAATCAGCTCCCGATTCGAGCGCATCGAGATGAGAATGGAGATTGGGGATTTAGTATGGATGAGGATTCACTTCTTTTACAGCTTAAAGATGGGCTTGGAGAAGATGTGGAAGTGATTTATATTGGTTGTCTTAGAGAGGAGGTTGATCCAAGGGAGCAAGATGAAGTTGCACAAACTCTTTTGGACCGATTCAAGTGTGTCCCAACGTTCCTTCCTCCGGAGCTTTTTAGTAAATTTTATCATGGATTCTGCAAGCAACATTTGTGGCCACTGTTTCACTATATGCTTCCTCTGTCACCGGATCTTGGTGGCCGATTTGATCGGTCTCTTTGGCAAGCGTATCTTTCGGTTAATAAGATATTTGCAGATAAAGTTATGGAAGTGATTAGCCCTGATGATGACTTTGTTTGGGTTCATGATTACCATTTGATGGTTTTGCCAACATTTTTGAGGAAGAGGTTTAACAGGGTGAAGCTTGGATTCTTCCTACACAGTCCATTTCCTTCGTCGGAAATTTATCGAACCCTTCCAGTAAGAGATGAACTTCTTCGAGCACTATTGAACTCTGATCTTATTGGCTTCCACACATTTGATTATGCTAGGCACTTTTTATCTTGCTGCAGCAGAATGCTTGGTCTGTCTTATCAATCTAAGCGAGGTTACATTGGGCTTGAATACTATGGTCGTACTGTGAGCATTAAGATTCTTCCTGTCGGCATTCATATAGGCCAGCTTCAAAATGTATTAAATCTCCCCGAGACTGTATCCAAAGTTGCAGAATTGCAAGATCGGTTCAAGGGTCAAACTGTTTTGCTTGGGGTTGATGACATGGACATATTTAAAGGGATCAGCCTGAAACTTTTGGCATTTGAACAACTGCTCCGACAACATCCCGAGAGATGGGGTAAAGCTGTGTTAGTACAGATTGCGAACCCTGCAAGAGGTAGAGGGAAAGATGTACAGGAGGTCGTGGCTGAAACTACTGCAACGGTGAATAGAATCAATGCAACATTTAGAAGGCCAGGATACGAGCCTGTGGTTTTGATTAACACTCCCTTGCAGTTTTACGAGCGAATCGCTTACTATGCAATTGCTGAGTGCTGCCTCGTTACAGCAGTGAGAGACGGGATGAATCTTATACCTTACGAGTATATTATATGTCGACAAGGCAACGAGAAGCTTGACGATGTTCTTGGGCTAAATCCTTCAACTGCAAAGAAGAGCATGCTAGTGTTGTCTGAGTTTATTGGGTGTTCCCCATCCCTCAGTGGAGCTATTCGGGTTAACCCATGGAATATTGAAGCTGTCACCGAAGCAATGGATTCTGCCCTGGTAATCCCTGAGGCGGAAAAGCAATTACGACATGAAAAGCATTATAGGTACGTTAGTACGCATGATGTTGCATACTGGGCGCGCAGCTTTTTGCAGGATCTGGGCAGGGCTTGCAGAGACCATTCCATGAGGAGATGCTGGGGTATAGGTTTTGGTTTAGGTTTTCGAGTCATCGCCCTGGATCCAAATTTCCGGAAGCTTTCAGTTGAACATATTGTTTCAGTTTATAAGAGAACCTGCCACCGGGCAATCTTGTTAGATTATGATGGTATCATGATGCTTCCTGGCTCAATTAGCATGAATCCAACAGCTGAGGCCCTTGGAATCTTGAACAACTTGTGTAAAGATCCTAAGAATGTTGTGTTCCTTGTTAGCGGAAAGGACCGAAAAACTCTGACCGAATGGTTTTCACCGTGCGAAAAGCTTGGACTAGCTGCAGAACATGGTTTCTATCTTAGGCCAAATCATACTGCAGATTGGGAGACATGTGTAGGTGTGACCGATTTCGACTGGAAACAGATTGCAGAACCCGTTATGCAATTGTATACCGAGACAACTGACGGTTCTACAATCGAAACTAAAGAGAGTGCACTTGTTTGGAACTACCTTTATGCAGATCCTGATTTCGGGTCGTGCCAGGCCAAGGAACTTTTAGATCACCTGGAAAGTGTTCTTGCTAATGAGCCAGTTTCTGTCAAGAGTGGCCAACACATTGTAGAAGTCAAACCTCAGGGTGTAAACAAAGGTATTGTAGCAGAATATCTCTTGCAAACAATGAAGGAGAGAGGCATGCTTCCCGATTTCGTTCTATGCATTGGAGACGACAGGTCGGACGAGGATATGTTCGAGGTGATAACGAGTGCAAGAGACACTCTTCCTCCCGTTGCTGAAGTGTTCGGTTGCACGGTCGGCCAAAAACCGAGCAAGGCCAAGTATTACTTGGAAGACACACACGAAATCTTGAGAATGTTACAAGGTCTCACCCATGCGTCCGAGCACGCCGCTAGAGCCGCTCCGCAGACGACGCCTCATAGAGTGGTAATTGCAGAGAGTAAATAA 2823 44.7 MVGFLFFSTIKFLSLFPPLSLSANSAIRGFLLFISVSSVLFQRSQIFAAYKAGTKFSSVIFAAVAVYLRGVLGDLIMVSRSYSNLLELASGGCSPTFGLGREKRRLPRVATVAGVLSELDDDSCNSTGSDAPSSVAQDRMIIVGNQLPIRAHRDENGDWGFSMDEDSLLLQLKDGLGEDVEVIYIGCLREEVDPREQDEVAQTLLDRFKCVPTFLPPELFSKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQNVLNLPETVSKVAELQDRFKGQTVLLGVDDMDIFKGISLKLLAFEQLLRQHPERWGKAVLVQIANPARGRGKDVQEVVAETTATVNRINATFRRPGYEPVVLINTPLQFYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDDVLGLNPSTAKKSMLVLSEFIGCSPSLSGAIRVNPWNIEAVTEAMDSALVIPEAEKQLRHEKHYRYVSTHDVAYWARSFLQDLGRACRDHSMRRCWGIGFGLGFRVIALDPNFRKLSVEHIVSVYKRTCHRAILLDYDGIMMLPGSISMNPTAEALGILNNLCKDPKNVVFLVSGKDRKTLTEWFSPCEKLGLAAEHGFYLRPNHTADWETCVGVTDFDWKQIAEPVMQLYTETTDGSTIETKESALVWNYLYADPDFGSCQAKELLDHLESVLANEPVSVKSGQHIVEVKPQGVNKGIVAEYLLQTMKERGMLPDFVLCIGDDRSDEDMFEVITSARDTLPPVAEVFGCTVGQKPSKAKYYLEDTHEILRMLQGLTHASEHAARAAPQTTPHRVVIAESK 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46976806 46981166 - Maker00021163 Lcy6g2240 636684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2240 940 CDD HAD_TPP 671 907 - -
Lcy6g2240 940 FunFam Trehalose-6-phosphate synthase 2 753 832 - -
Lcy6g2240 940 Pfam Trehalose-phosphatase 673 905 IPR003337 GO:0005992(InterPro)
Lcy6g2240 940 Pfam Glycosyltransferase family 20 139 622 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy6g2240 940 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 132 390 - -
Lcy6g2240 940 SUPERFAMILY HAD-like 670 915 IPR036412 -
Lcy6g2240 940 CDD GT20_TPS 139 622 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy6g2240 940 FunFam Alpha,alpha-trehalose-phosphate synthase 392 607 - -
Lcy6g2240 940 Gene3D Glycogen Phosphorylase B; 391 607 - -
Lcy6g2240 940 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 669 786 - -
Lcy6g2240 940 Gene3D Glycogen Phosphorylase B; 132 390 - -
Lcy6g2240 940 NCBIfam trehalose-phosphatase 669 916 IPR003337 GO:0005992(InterPro)
Lcy6g2240 940 Gene3D - 669 786 IPR023214 -
Lcy6g2240 940 Gene3D - 799 930 IPR023214 -
Lcy6g2240 940 NCBIfam HAD-IIB family hydrolase 672 873 IPR006379 -
Lcy6g2240 940 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 139 626 - -
Lcy6g2240 940 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 799 928 - -
Lcy6g2240 940 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 103 917 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0253 Lcy-Chr1:2266078 Lcy6g2240 Lcy-Chr6:46976806 0 dispersed
Lcy2g0645 Lcy-Chr2:5493497 Lcy6g2240 Lcy-Chr6:46976806 0 dispersed
Lcy4g0684 Lcy-Chr4:8257974 Lcy6g2240 Lcy-Chr6:46976806 0 dispersed
Lcy5g1792 Lcy-Chr5:40640939 Lcy6g2240 Lcy-Chr6:46976806 2.03E-128 dispersed
Lcy6g2240 Lcy-Chr6:46976806 Lcy7g0196 Lcy-Chr7:1718723 0 dispersed
Lcy6g2240 Lcy-Chr6:46976806 Lcy7g1119 Lcy-Chr7:12420797 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2240 K16055 - csv:101207192 1691.78