Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2242 ATGGGAAGGCACAAGACCAGGTTACATATTGGACAGTTGGTTAAAGACACCTCTGCTAAACTTAAACAAGCCAGTGAAATAGATCATCATGCTGAAGTTAATGCCAGCAAGAAAATTGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTGTTGAAAGAATTTCAGAAGGCTCAGCGACTTGCAGCTGAGAGGGAAACGGCATATACACCTTTTGTTCCCCAGGCTGTTCTACCTTCTAGCTATACAGCCGGCGAGTCAGATGCGAGCTCAGAAAAGAATCTTGAACAGCGTGCCCTCCTTGTGGAATCTAGGAGACAAGAGGTCTTGCTGTTGGACAATGAAATAGCCTTCAACGAAGCAATCATTGAGGAAAGAGAACAAGGTATTCATGAAATCCAGCAGCAAATTGGAGAAGTGAATGAAATTTTTAAAGATCTTGCGGTTCTAGTCCATGAACAGGGAGCCATGATTGGTAAGTGA 483 43.06 MGRHKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAGESDASSEKNLEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIGK 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47008715 47011955 - Maker00021315 Lcy6g2242 636686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2242 160 Gene3D - 3 73 - -
Lcy6g2242 160 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 120 160 IPR000727 -
Lcy6g2242 160 SUPERFAMILY t-snare proteins 5 155 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Lcy6g2242 160 Pfam Syntaxin-like protein 4 69 IPR006011 GO:0016020(InterPro)
Lcy6g2242 160 PANTHER SYNTAXIN 4 158 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lcy6g2242 160 Gene3D - 121 160 - -
Lcy6g2242 160 FunFam Syntaxin 2 73 - -
Lcy6g2242 160 CDD SNARE_Qa 123 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0046 Lcy-Chr3:1159040 Lcy6g2242 Lcy-Chr6:47008715 3.24E-55 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2242 - - - 0.0