Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy6g2242 | ATGGGAAGGCACAAGACCAGGTTACATATTGGACAGTTGGTTAAAGACACCTCTGCTAAACTTAAACAAGCCAGTGAAATAGATCATCATGCTGAAGTTAATGCCAGCAAGAAAATTGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTGTTGAAAGAATTTCAGAAGGCTCAGCGACTTGCAGCTGAGAGGGAAACGGCATATACACCTTTTGTTCCCCAGGCTGTTCTACCTTCTAGCTATACAGCCGGCGAGTCAGATGCGAGCTCAGAAAAGAATCTTGAACAGCGTGCCCTCCTTGTGGAATCTAGGAGACAAGAGGTCTTGCTGTTGGACAATGAAATAGCCTTCAACGAAGCAATCATTGAGGAAAGAGAACAAGGTATTCATGAAATCCAGCAGCAAATTGGAGAAGTGAATGAAATTTTTAAAGATCTTGCGGTTCTAGTCCATGAACAGGGAGCCATGATTGGTAAGTGA | 483 | 43.06 | MGRHKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAGESDASSEKNLEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIGK | 160 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 47008715 | 47011955 | - | Maker00021315 | Lcy6g2242 | 636686 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy6g2242 | 160 | Gene3D | - | 3 | 73 | - | - | |
Lcy6g2242 | 160 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 120 | 160 | IPR000727 | - | |
Lcy6g2242 | 160 | SUPERFAMILY | t-snare proteins | 5 | 155 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Lcy6g2242 | 160 | Pfam | Syntaxin-like protein | 4 | 69 | IPR006011 | GO:0016020(InterPro) | |
Lcy6g2242 | 160 | PANTHER | SYNTAXIN | 4 | 158 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Lcy6g2242 | 160 | Gene3D | - | 121 | 160 | - | - | |
Lcy6g2242 | 160 | FunFam | Syntaxin | 2 | 73 | - | - | |
Lcy6g2242 | 160 | CDD | SNARE_Qa | 123 | 158 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy3g0046 | Lcy-Chr3:1159040 | Lcy6g2242 | Lcy-Chr6:47008715 | 3.24E-55 | dispersed |
Pathway information
