Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2255 ATGAGTAGCAGTGAGATGGAGAAACCACCTAAAGAGAAGGAGACGAAGACACCGCCTCCTACTACCCAGGAGCAGACTTCAACCACAAGTGCTGGTGCAGTTAATCCTGATTGGTCGGGTTTTCAGGCATATTCTCCAATTCCTCCGCATGGTTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGAGTTCAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCCCCTGGTGGCATATATGCTCATCCTTCCATTCCTCCGGGATCGTATCCTTTTAGCCCATTTGCAATGGCTTCTCCAAATGGCATCACTGAGGCCTCTGGTAATACGGCAGGCAGCTTAGAGGGGGAGGTTAAGCCACCTGAAGTGAAGGAAAAGCTGCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACAGGGAAGACCAATGAGCTCGGTAAAACATCTGGAACATCTGCCAATGGAGCATACTCTAAGAGTGGTGAGAGTGCCAGCGAAGGTACAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGCAAGACACTTTGGAAGTTGAAGCATCTCAGAATGGTAACTCTATGCATGGTACTCAAAATGGTGGATCCAATACTCAGGCAATGGCTGTCATCCCATTGGCAGCTGCTGGGGCCCCGGGAGTCGTTCCTGGTCCCACAACCAACTTAAATATTGGAATGGATTATTGGGGTGCATCATCTGCTATCCCTGCAATGCGTGGAAAGGTTCCATCAACTCCAGTTGCTGGAGGATTAGTTGCCCCTGGATCTCGGGATAGCGTACAGTCACAGCTTTGGTTGCAGGACGAGAGAGAGCTTAAAAGACAGAGAAGAAAGCAGTCAAACAGAGAATCTGCACGACGATCCCGGTTACGCAAGCAGGCAGAATGTGACGAACTAGCACACCGAGCTGAAGCCTTGCAAGAAGAAAATGCCAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGAATATGAACAACTACTTTCAGAGAATGCTTCTCTGAAGGAAAGACTTGGGGAAGTTCCGGGGAACGAAGAAGTAAGGGCCAGCAGGAACGGCCAGCGTTCGAGTAACGAAACCACACAACTTAAAGAGTCAGAGGCTGTGCAAGTTGGTAACAAGAATTGA 1212 48.27 MSSSEMEKPPKEKETKTPPPTTQEQTSTTSAGAVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFAMASPNGITEASGNTAGSLEGEVKPPEVKEKLPIKRSKGSLGSLNMITGKTNELGKTSGTSANGAYSKSGESASEGTSEGSDANSQNESQPKLGSRQDTLEVEASQNGNSMHGTQNGGSNTQAMAVIPLAAAGAPGVVPGPTTNLNIGMDYWGASSAIPAMRGKVPSTPVAGGLVAPGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSEYEQLLSENASLKERLGEVPGNEEVRASRNGQRSSNETTQLKESEAVQVGNKN 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47216578 47221901 - Maker00021316 Lcy6g2255 636699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2255 403 MobiDBLite consensus disorder prediction 377 403 - -
Lcy6g2255 403 Coils Coil 317 365 - -
Lcy6g2255 403 Pfam Disordered region downstream of MFMR 135 262 - -
Lcy6g2255 403 MobiDBLite consensus disorder prediction 299 319 - -
Lcy6g2255 403 SMART brlzneu 297 361 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g2255 403 PANTHER G-BOX-BINDING FACTOR 3-RELATED 22 387 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0043565(InterPro)
Lcy6g2255 403 MobiDBLite consensus disorder prediction 146 205 - -
Lcy6g2255 403 MobiDBLite consensus disorder prediction 1 41 - -
Lcy6g2255 403 MobiDBLite consensus disorder prediction 363 403 - -
Lcy6g2255 403 Gene3D - 300 354 - -
Lcy6g2255 403 MobiDBLite consensus disorder prediction 19 36 - -
Lcy6g2255 403 MobiDBLite consensus disorder prediction 119 205 - -
Lcy6g2255 403 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 299 362 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g2255 403 CDD bZIP_plant_GBF1 302 352 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g2255 403 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Lcy6g2255 403 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 304 319 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g2255 403 SUPERFAMILY Leucine zipper domain 300 356 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g2255 403 MobiDBLite consensus disorder prediction 1 18 - -
Lcy6g2255 403 Pfam bZIP transcription factor 297 359 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2026 Lcy-Chr11:43807791 Lcy6g2255 Lcy-Chr6:47216578 3.81E-29 transposed
Lcy1g0729 Lcy-Chr1:6231076 Lcy6g2255 Lcy-Chr6:47216578 5.38E-36 transposed
Lcy12g1977 Lcy-Chr12:41161771 Lcy6g2255 Lcy-Chr6:47216578 2.80E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20347 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2255 K09060 - csv:101206627 685.256