Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2274 ATGTTTACATGCATAGCATGTACGAAACAGACAGACGACGGGGGTGAGGAGGGGGCTGCGCGTGGGAGTGGCACGCCTAGTACAAAGGAAGCCGTCAAAAGCCTGACAACGCAGATTAAGGACATGGCGTTGAAATTCTCTGGTGCTTATAGGCAGTGCAAACCCTGCACAGGCTCCAGTAGCTATAAGAAAGGACAACGACCTTACCCAGATTTTGACACTGCTTCAGAAGGGGTTCCATACCCCTACATAGGAGGGGCAAGTGCAAGTTCAACACCGGCCTGGGACTTCCCTCCTGTTAATCGCCACCCACATCCCAGATCTGACTCTAGATTTAAAGGTGTGTTCAGAGGAGACCAGACCCCTGGAGCCGATTCCACCATATCAGCATGTGATGTGGTGCTTGAGGATGAGGATGAGCCGAAAGAGTGGATGGCACAGGTGGAGCCTGGCGTTCACATTACTTTTGTGTCCCTACCCAATGGAGGCAATGATTTAAAACGAATTCGTTTCAATCGAGAAATGTTCAACAAGTGGCAAGCTCAGCGTTGGTGGGGCGAGAACTATGACAGAATAACGGAGCTCTATAATGTCCAGAGATTCAACCAACAAGCTCTTCATACGCCACCAAGAACTGAGGACGGGAGGGATTCTTCTTACTCAAAGGTGGGAAGGGATAGTCCGATGACCTCAGCGAACAAAGATTGGACGCCGAGAAACTATAAGCCTTCTGGAAGTAAAGGTTATTTTCCATCTGACCAGCATTTTGATCAAGGAAGCAGCCACCACTATGCAGGGTCAAGTGCCTATCCAGGAGGCGGCGCGAAAGGTGACATGTCGTCTATGGAAGCATCACGCACGACAACCTCTTCTAGAGACGAACCTTCGGTTTCCATTAGCAATGCAAGCGACATCGAGGCGGAATGGGTCGAGGAAGATGAACCAGGAGTCTACATAACAATCAGGCAGCTTGTTGATGGCACTAGAGAGCTTCGTCGTGTCAGATTCAGCCGTGAAAGGTTCGGGGAGGTGAACGCGAAGCAATGGTGGGAACAGAACAGGGAGAGAATCCAAGCTCAATACCTATAA 1089 50.05 MFTCIACTKQTDDGGEEGAARGSGTPSTKEAVKSLTTQIKDMALKFSGAYRQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGASASSTPAWDFPPVNRHPHPRSDSRFKGVFRGDQTPGADSTISACDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFNREMFNKWQAQRWWGENYDRITELYNVQRFNQQALHTPPRTEDGRDSSYSKVGRDSPMTSANKDWTPRNYKPSGSKGYFPSDQHFDQGSSHHYAGSSAYPGGGAKGDMSSMEASRTTTSSRDEPSVSISNASDIEAEWVEEDEPGVYITIRQLVDGTRELRRVRFSRERFGEVNAKQWWEQNRERIQAQYL 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47429888 47436605 + Maker00021343 Lcy6g2274 636718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2274 362 Pfam Transcription factor regulating root and shoot growth via Pin3 142 196 IPR013591 -
Lcy6g2274 362 Pfam Transcription factor regulating root and shoot growth via Pin3 306 361 IPR013591 -
Lcy6g2274 362 MobiDBLite consensus disorder prediction 281 299 - -
Lcy6g2274 362 MobiDBLite consensus disorder prediction 223 240 - -
Lcy6g2274 362 MobiDBLite consensus disorder prediction 102 124 - -
Lcy6g2274 362 MobiDBLite consensus disorder prediction 203 299 - -
Lcy6g2274 362 ProSiteProfiles BRX domain profile. 307 362 IPR013591 -
Lcy6g2274 362 ProSiteProfiles BRX domain profile. 142 197 IPR013591 -
Lcy6g2274 362 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 362 IPR044532 -
Lcy6g2274 362 Pfam Transcription factor BRX N-terminal domain 23 56 IPR027988 -
Lcy6g2274 362 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2253 Lcy-Chr4:49072595 Lcy6g2274 Lcy-Chr6:47429888 3.52E-85 dispersed
Lcy6g2274 Lcy-Chr6:47429888 Lcy9g0914 Lcy-Chr9:30696883 8.43E-16 dispersed
Lcy6g2274 Lcy-Chr6:47429888 Lcy3g2234 Lcy-Chr3:49184803 2.02E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2274 - - - 0.0