Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2277 ATGCTCTCTCGTTTTCCCCCAATTTTCTTCCATTCGATTCGGCATTTTCGGATTCAATTCCCATTTCGATCGAAGTTTCAACTTCCAAGGACGCACTTAATTCTTCGTTGGGGTGTTCGAGCTTCGTCACCATTTCTTGGAATGGCAGCGTCAATGGCGCCGGGTAAGCTGACGGAAGGAGGAGTGATGGTGATATGCAAGAGGGAATCGACGGCAGAGGCGTTCCAGCCGGTTGTACAAGTAATTGACTTGAAATTGGTTAACACTGCGCAGCAATCGGGCAGCGAGAGGTACAGATTGTTGCTTTCTGATGGAACCCATTACCAGCAAGGAATGTTGGGCACTCAGCTGAATGAATTGGTCAAGTCTGGGAAGTTGCAGAAAGGTTCCATCGTTCGACTGCGGCAGTATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTCATTGAGTTGGAGGTGATAGAAGAAATATGTGAATTTATTGGCCAGCCTGTACCAGCAACAAGATCAATAACAGGTGCATTTAGTGGAAACCCCCAATCCTCTGTGGGGGCTTCACCTGGCAGTGGAATGGTTGGTAAGGTGAATGTATCTAGTGCATCTTTTGAACAGCATAAAGTGAATCAATCACATGTACCGCATGTAGGATCTTATTCTAACATTCCTGAGTCTGGAAGATACAACGCATCAACTGTGCCTACTCTTTACTCTAAGACAGATCCTGGAACAAGATTTAACGGGTCATCTCCTTTAAGTGGGTCATATGGTGATCAGAAGATGGCATATCACAACAATGGATCAGATATTTCAAGGCCACCTCTAAATGCTTATGGCCGTCCTCAGCCAACATATCAGCAGTCACCTCCAATGTACAGTAACAGAGGACCAGTAGCAAAAAACGAAGCTCCCCCGAGGATAATGCCTATTACTGCTCTCAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCGAAAGGAGAACTTAGACACTACAACAATCCTCGTGGCGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCATACCGTGGAGAAATACGAGTAACATGCTTCAATGCAGTAGCTGATCAATTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTTTAACCATCTCAAAAATGACTTTGAAATATTTCTTGAGAGCACATCAACAATCCAACCTTGCTTTGAGGATGACCAGTCAATCCCCCAACAGCAGTTTCATTTCCATCAGATTAATGAGATTGAAGGCATGGACAGCAACAGTGTAGTAGATGTAATTGGTGTTGTTTCCTCCATTAATCCTGCAACTTCTATAATGAGAAAAAATGGTACTGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGCAGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCGGAAGGACAAAGATTGCAAAATATGTGTGACTCAGGGTTGTTCCCAGTTTTGGCTGTGAAATCTGGTAGAGTGAGTGACTTCAATGGGAAGGCAGTCGGAACCATTTCAACGAGTCAGCTTTTTGTAGAGCCAGATTTCCCCGAGGCTCGTACGCTGAGAGAGTGGTTTGAGAAGGAAGGGAGGAGTACTCCTTCTGTCTCTATATCCAGGGAAGTTTCTAGTGTGGGAAGGACAGAGATCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCGGATTGGATTACTGTTAGTGCAACCGTTTCCTTTATTAAGGTGGACAACTTCTGTTACACAGCATGTCCTATCATGATCGGGGACCGACAATGCAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGACCGGTGTGATCAGTCTGTTGACGAATGTGACTACAGGTACATACTCCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTATTATTTGAAATATGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGCAAGGTTCTTTTTACAAAATTTATCATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAGCAGAGAGTAAGGTCAACGGTGGTGAAAGCAGAAAGCATTAATTTTTCAACCGAGTCCCGGTTTCTTCTAGATTTGATGGAAAAGCTCAGAGCGGAGAACCCTAGTTCTATTACCCCGAAGGCAGAAAGTACCATACATAATCCCGGACTTCATGACCCTGGAGCTGGGAATGTTGGTGGTGGACAGTTCGTGTCACCCATTCGAAATAGTAGCAATGTTGCCAGAGAATATAGTACACCAAACCAAGGTATTCAGTATGGGAACCAGTACAGCAGTTCTAGGCCTTCTCAATCCATGCCGCTTAACTCGCAGACGTACTGCAACAGCTGTGGGGGCTCTGGCCACAGCTCAATGAACTGCCCGAGTATCATGAGCGGTCCTGCGCTTCACGTTGGAGGAGGGATGTATTCAAATAGATCTTCTGGCCCTTCTGGTGGTGCCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCACTGGGCTCGGGACTGCCCCGGTTTGGCCACGGTCCCTCCAGCTTATGGTAACGGTGGCTTCACAGCTAGATGA 2712 44.54 MLSRFPPIFFHSIRHFRIQFPFRSKFQLPRTHLILRWGVRASSPFLGMAASMAPGKLTEGGVMVICKRESTAEAFQPVVQVIDLKLVNTAQQSGSERYRLLLSDGTHYQQGMLGTQLNELVKSGKLQKGSIVRLRQYVCNPVQERLIIIVIELEVIEEICEFIGQPVPATRSITGAFSGNPQSSVGASPGSGMVGKVNVSSASFEQHKVNQSHVPHVGSYSNIPESGRYNASTVPTLYSKTDPGTRFNGSSPLSGSYGDQKMAYHNNGSDISRPPLNAYGRPQPTYQQSPPMYSNRGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNAVADQFYNQIESGKVYFISKGSLKPAQKNFNHLKNDFEIFLESTSTIQPCFEDDQSIPQQQFHFHQINEIEGMDSNSVVDVIGVVSSINPATSIMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSGRVSDFNGKAVGTISTSQLFVEPDFPEARTLREWFEKEGRSTPSVSISREVSSVGRTEIRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSTESRFLLDLMEKLRAENPSSITPKAESTIHNPGLHDPGAGNVGGGQFVSPIRNSSNVAREYSTPNQGIQYGNQYSSSRPSQSMPLNSQTYCNSCGGSGHSSMNCPSIMSGPALHVGGGMYSNRSSGPSGGASGECFKCHQTGHWARDCPGLATVPPAYGNGGFTAR 903
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 47469955 47474999 - Maker00021232 Lcy6g2277 636721
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2277 903 SUPERFAMILY Nucleic acid-binding proteins 573 750 IPR012340 -
Lcy6g2277 903 CDD RPA1N 60 145 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Lcy6g2277 903 Pfam OB-fold nucleic acid binding domain 321 405 IPR004365 GO:0003676(InterPro)
Lcy6g2277 903 PANTHER REPLICATION FACTOR A 1, RFA1 310 730 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Lcy6g2277 903 Pfam Replication protein A OB domain 431 534 IPR031657 -
Lcy6g2277 903 NCBIfam replication factor-a protein 1 (rpa1) 284 749 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Lcy6g2277 903 MobiDBLite consensus disorder prediction 240 273 - -
Lcy6g2277 903 Pfam Replication factor-A protein 1, N-terminal domain 57 157 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Lcy6g2277 903 Gene3D - 558 750 IPR012340 -
Lcy6g2277 903 ProSiteProfiles Zinc finger CCHC-type profile. 872 886 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lcy6g2277 903 CDD RPA1_DBD_A 310 413 - -
Lcy6g2277 903 ProSiteProfiles Zinc finger CCHC-type profile. 828 843 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lcy6g2277 903 CDD RPA1_DBD_C 576 749 IPR047192 -
Lcy6g2277 903 FunFam Replication protein A subunit 420 558 - -
Lcy6g2277 903 Pfam Replication factor-A C terminal domain 592 743 IPR013955 -
Lcy6g2277 903 SMART c2hcfinal6 871 887 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lcy6g2277 903 SMART c2hcfinal6 827 843 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lcy6g2277 903 SUPERFAMILY Nucleic acid-binding proteins 307 420 IPR012340 -
Lcy6g2277 903 Gene3D - 823 890 - -
Lcy6g2277 903 SUPERFAMILY Nucleic acid-binding proteins 426 554 IPR012340 -
Lcy6g2277 903 Gene3D - 307 416 IPR012340 -
Lcy6g2277 903 SUPERFAMILY Retrovirus zinc finger-like domains 852 890 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Lcy6g2277 903 MobiDBLite consensus disorder prediction 799 820 - -
Lcy6g2277 903 SUPERFAMILY Nucleic acid-binding proteins 56 164 IPR012340 -
Lcy6g2277 903 FunFam Replication protein A subunit 56 170 - -
Lcy6g2277 903 CDD RPA1_DBD_B 442 549 - -
Lcy6g2277 903 Gene3D - 420 557 IPR012340 -
Lcy6g2277 903 MobiDBLite consensus disorder prediction 281 295 - -
Lcy6g2277 903 MobiDBLite consensus disorder prediction 240 304 - -
Lcy6g2277 903 Pfam Zinc knuckle 871 886 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lcy6g2277 903 FunFam Replication protein A subunit 307 417 - -
Lcy6g2277 903 FunFam Replication protein A subunit 559 750 - -
Lcy6g2277 903 Gene3D - 55 170 IPR012340 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0510 Lcy-Chr2:4371207 Lcy6g2277 Lcy-Chr6:47469955 8.59E-88 dispersed
Lcy4g2255 Lcy-Chr4:49083464 Lcy6g2277 Lcy-Chr6:47469955 1.20E-246 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2277 K07466 - csv:101211358 1540.4