Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy6g2277 | ATGCTCTCTCGTTTTCCCCCAATTTTCTTCCATTCGATTCGGCATTTTCGGATTCAATTCCCATTTCGATCGAAGTTTCAACTTCCAAGGACGCACTTAATTCTTCGTTGGGGTGTTCGAGCTTCGTCACCATTTCTTGGAATGGCAGCGTCAATGGCGCCGGGTAAGCTGACGGAAGGAGGAGTGATGGTGATATGCAAGAGGGAATCGACGGCAGAGGCGTTCCAGCCGGTTGTACAAGTAATTGACTTGAAATTGGTTAACACTGCGCAGCAATCGGGCAGCGAGAGGTACAGATTGTTGCTTTCTGATGGAACCCATTACCAGCAAGGAATGTTGGGCACTCAGCTGAATGAATTGGTCAAGTCTGGGAAGTTGCAGAAAGGTTCCATCGTTCGACTGCGGCAGTATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTCATTGAGTTGGAGGTGATAGAAGAAATATGTGAATTTATTGGCCAGCCTGTACCAGCAACAAGATCAATAACAGGTGCATTTAGTGGAAACCCCCAATCCTCTGTGGGGGCTTCACCTGGCAGTGGAATGGTTGGTAAGGTGAATGTATCTAGTGCATCTTTTGAACAGCATAAAGTGAATCAATCACATGTACCGCATGTAGGATCTTATTCTAACATTCCTGAGTCTGGAAGATACAACGCATCAACTGTGCCTACTCTTTACTCTAAGACAGATCCTGGAACAAGATTTAACGGGTCATCTCCTTTAAGTGGGTCATATGGTGATCAGAAGATGGCATATCACAACAATGGATCAGATATTTCAAGGCCACCTCTAAATGCTTATGGCCGTCCTCAGCCAACATATCAGCAGTCACCTCCAATGTACAGTAACAGAGGACCAGTAGCAAAAAACGAAGCTCCCCCGAGGATAATGCCTATTACTGCTCTCAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCGAAAGGAGAACTTAGACACTACAACAATCCTCGTGGCGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCATACCGTGGAGAAATACGAGTAACATGCTTCAATGCAGTAGCTGATCAATTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTTTAACCATCTCAAAAATGACTTTGAAATATTTCTTGAGAGCACATCAACAATCCAACCTTGCTTTGAGGATGACCAGTCAATCCCCCAACAGCAGTTTCATTTCCATCAGATTAATGAGATTGAAGGCATGGACAGCAACAGTGTAGTAGATGTAATTGGTGTTGTTTCCTCCATTAATCCTGCAACTTCTATAATGAGAAAAAATGGTACTGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGCAGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCGGAAGGACAAAGATTGCAAAATATGTGTGACTCAGGGTTGTTCCCAGTTTTGGCTGTGAAATCTGGTAGAGTGAGTGACTTCAATGGGAAGGCAGTCGGAACCATTTCAACGAGTCAGCTTTTTGTAGAGCCAGATTTCCCCGAGGCTCGTACGCTGAGAGAGTGGTTTGAGAAGGAAGGGAGGAGTACTCCTTCTGTCTCTATATCCAGGGAAGTTTCTAGTGTGGGAAGGACAGAGATCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCGGATTGGATTACTGTTAGTGCAACCGTTTCCTTTATTAAGGTGGACAACTTCTGTTACACAGCATGTCCTATCATGATCGGGGACCGACAATGCAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGACCGGTGTGATCAGTCTGTTGACGAATGTGACTACAGGTACATACTCCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTATTATTTGAAATATGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGCAAGGTTCTTTTTACAAAATTTATCATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAGCAGAGAGTAAGGTCAACGGTGGTGAAAGCAGAAAGCATTAATTTTTCAACCGAGTCCCGGTTTCTTCTAGATTTGATGGAAAAGCTCAGAGCGGAGAACCCTAGTTCTATTACCCCGAAGGCAGAAAGTACCATACATAATCCCGGACTTCATGACCCTGGAGCTGGGAATGTTGGTGGTGGACAGTTCGTGTCACCCATTCGAAATAGTAGCAATGTTGCCAGAGAATATAGTACACCAAACCAAGGTATTCAGTATGGGAACCAGTACAGCAGTTCTAGGCCTTCTCAATCCATGCCGCTTAACTCGCAGACGTACTGCAACAGCTGTGGGGGCTCTGGCCACAGCTCAATGAACTGCCCGAGTATCATGAGCGGTCCTGCGCTTCACGTTGGAGGAGGGATGTATTCAAATAGATCTTCTGGCCCTTCTGGTGGTGCCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCACTGGGCTCGGGACTGCCCCGGTTTGGCCACGGTCCCTCCAGCTTATGGTAACGGTGGCTTCACAGCTAGATGA | 2712 | 44.54 | MLSRFPPIFFHSIRHFRIQFPFRSKFQLPRTHLILRWGVRASSPFLGMAASMAPGKLTEGGVMVICKRESTAEAFQPVVQVIDLKLVNTAQQSGSERYRLLLSDGTHYQQGMLGTQLNELVKSGKLQKGSIVRLRQYVCNPVQERLIIIVIELEVIEEICEFIGQPVPATRSITGAFSGNPQSSVGASPGSGMVGKVNVSSASFEQHKVNQSHVPHVGSYSNIPESGRYNASTVPTLYSKTDPGTRFNGSSPLSGSYGDQKMAYHNNGSDISRPPLNAYGRPQPTYQQSPPMYSNRGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNAVADQFYNQIESGKVYFISKGSLKPAQKNFNHLKNDFEIFLESTSTIQPCFEDDQSIPQQQFHFHQINEIEGMDSNSVVDVIGVVSSINPATSIMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSGRVSDFNGKAVGTISTSQLFVEPDFPEARTLREWFEKEGRSTPSVSISREVSSVGRTEIRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSTESRFLLDLMEKLRAENPSSITPKAESTIHNPGLHDPGAGNVGGGQFVSPIRNSSNVAREYSTPNQGIQYGNQYSSSRPSQSMPLNSQTYCNSCGGSGHSSMNCPSIMSGPALHVGGGMYSNRSSGPSGGASGECFKCHQTGHWARDCPGLATVPPAYGNGGFTAR | 903 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 47469955 | 47474999 | - | Maker00021232 | Lcy6g2277 | 636721 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy6g2277 | 903 | SUPERFAMILY | Nucleic acid-binding proteins | 573 | 750 | IPR012340 | - | |
| Lcy6g2277 | 903 | CDD | RPA1N | 60 | 145 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Lcy6g2277 | 903 | Pfam | OB-fold nucleic acid binding domain | 321 | 405 | IPR004365 | GO:0003676(InterPro) | |
| Lcy6g2277 | 903 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 310 | 730 | IPR004591 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER) | |
| Lcy6g2277 | 903 | Pfam | Replication protein A OB domain | 431 | 534 | IPR031657 | - | |
| Lcy6g2277 | 903 | NCBIfam | replication factor-a protein 1 (rpa1) | 284 | 749 | IPR004591 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Lcy6g2277 | 903 | MobiDBLite | consensus disorder prediction | 240 | 273 | - | - | |
| Lcy6g2277 | 903 | Pfam | Replication factor-A protein 1, N-terminal domain | 57 | 157 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Lcy6g2277 | 903 | Gene3D | - | 558 | 750 | IPR012340 | - | |
| Lcy6g2277 | 903 | ProSiteProfiles | Zinc finger CCHC-type profile. | 872 | 886 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Lcy6g2277 | 903 | CDD | RPA1_DBD_A | 310 | 413 | - | - | |
| Lcy6g2277 | 903 | ProSiteProfiles | Zinc finger CCHC-type profile. | 828 | 843 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Lcy6g2277 | 903 | CDD | RPA1_DBD_C | 576 | 749 | IPR047192 | - | |
| Lcy6g2277 | 903 | FunFam | Replication protein A subunit | 420 | 558 | - | - | |
| Lcy6g2277 | 903 | Pfam | Replication factor-A C terminal domain | 592 | 743 | IPR013955 | - | |
| Lcy6g2277 | 903 | SMART | c2hcfinal6 | 871 | 887 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Lcy6g2277 | 903 | SMART | c2hcfinal6 | 827 | 843 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Lcy6g2277 | 903 | SUPERFAMILY | Nucleic acid-binding proteins | 307 | 420 | IPR012340 | - | |
| Lcy6g2277 | 903 | Gene3D | - | 823 | 890 | - | - | |
| Lcy6g2277 | 903 | SUPERFAMILY | Nucleic acid-binding proteins | 426 | 554 | IPR012340 | - | |
| Lcy6g2277 | 903 | Gene3D | - | 307 | 416 | IPR012340 | - | |
| Lcy6g2277 | 903 | SUPERFAMILY | Retrovirus zinc finger-like domains | 852 | 890 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Lcy6g2277 | 903 | MobiDBLite | consensus disorder prediction | 799 | 820 | - | - | |
| Lcy6g2277 | 903 | SUPERFAMILY | Nucleic acid-binding proteins | 56 | 164 | IPR012340 | - | |
| Lcy6g2277 | 903 | FunFam | Replication protein A subunit | 56 | 170 | - | - | |
| Lcy6g2277 | 903 | CDD | RPA1_DBD_B | 442 | 549 | - | - | |
| Lcy6g2277 | 903 | Gene3D | - | 420 | 557 | IPR012340 | - | |
| Lcy6g2277 | 903 | MobiDBLite | consensus disorder prediction | 281 | 295 | - | - | |
| Lcy6g2277 | 903 | MobiDBLite | consensus disorder prediction | 240 | 304 | - | - | |
| Lcy6g2277 | 903 | Pfam | Zinc knuckle | 871 | 886 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Lcy6g2277 | 903 | FunFam | Replication protein A subunit | 307 | 417 | - | - | |
| Lcy6g2277 | 903 | FunFam | Replication protein A subunit | 559 | 750 | - | - | |
| Lcy6g2277 | 903 | Gene3D | - | 55 | 170 | IPR012340 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g0510 | Lcy-Chr2:4371207 | Lcy6g2277 | Lcy-Chr6:47469955 | 8.59E-88 | dispersed | |
| Lcy4g2255 | Lcy-Chr4:49083464 | Lcy6g2277 | Lcy-Chr6:47469955 | 1.20E-246 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy6g2277 | K07466 | - | csv:101211358 | 1540.4 |