Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy6g2295 | ATGGGCAGGATGGGAGGTCGGCAGAGGACTTACAGCGCCAATTCCACGGATTATAAGCTTATTGAAGAGATTGGTTATGGTGCCAGTGCCACTGTTTTTCGAGCGATCTATACTCCCTCTAATGAAGTTGTCGCCATCAAGTGTTTGGATCTTGATCGCTGTAATAGTAATCTAGATGATATACGTAGGGAAGCTCAAACAATGAGTTTGATAGATCATCCGAACCTTGTAAGGGCTTATTGTTCATTTGTTGTTGAACGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAAGGTTCTTGTTTGCACCTAATGAAGACAGCGTACTCAGATGGCTTTGAAGAGGTTGCTATTGGTTCTATCCTGAAAGAAACTCTTAAAGCTTTGGAATACCTTCATCGGCAGGGACACATACATCGGGATGTGAAGGCTGGAAATATACTACTCGATAGTAATGGGTCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGATACAGGTGATAGACAGCGCTCTAGAAATACCTTTGTGGGAACCCCATGCTGGATGGCGCCGGAGGTATTGCAACCAGGAACTGGATATAATTCCAAAGTTCTAGATCCATCTATCTTCAGGATTCAGGCATGCAATGCTGTTGTTTCAGCTATTACATGCTTCCCCAATTCCCATTGTCGCAAAGACGCCCTGGAAAGAAGGAGGGGCACAAAGGATTTGGAAAAAAGGACTACAAGAAAAATCCTTGAAGGGTCGAGGAATTCAGACTTGGAAATCCCTCCTCCCATGAAGAATCACTTAGTTCGAAATGGAAAGAAGACTAACAAGGTCAACCGCCTCACGGTTACAAAAGGCTCTGATAAAGTTCTCCCAAAGAGTCTTCTTGTCCTTTTTGAAAGGGTCACCTCCTGGGTGTGGTTTAGGAGCAACTTGGGATCATTTGGTAGTGCCGTCTACCATCCAAAAGAAGATTGTACACCACTGTGGGGAGAGAGCATGGCCGATATTTGGTCCTTTGGTATTACAGCATTGGAGTTGGCTCATGGACATGCACCATTTTCAAAATATCCTCCAATGAAGGTGCTTCTTATGACCATACAAAATGCTCCTCCTGGGCTGGATTATGATAGAGATAAGAAGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAACCAAGAGGCCAACGGCTGACAAACTTTTAAAGCATTCTTTTTTCAAGAATGCTAAGCCTCCAGAGCTTTCTTTGAAGAAATTATTCGCTAACTTGCCTCCTCTTTCACATCGTGTAAAGGACCTGCAGCTTAAAGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCAGAGCAAGAAGCATTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAACTTTGATGTCGAGGATTTGAAAGCCCAAGCTTCCCTGGTGAATGATGATATGGCAGAGATGAAGGAAGAGGAGGAGAATATAAATTCTTGTAGTGTTAAGGATGCCTTTTGTTCTCAATATAGTTTGAGGAATTTCAATTCATGTAATGAATCATCTCAGGATGAGCATGGTGTCGGGGCAAGTGGTCAGGGATTGCCACAAGTGGAGTGCTTGAACAAAAAGGGTAAGTTTATGGAAAGTGATATGCTGAAAGCTGGGTTCCAAGAAAAAACTGGATGGAAGAGAAATGGAACTAGCACTGAAGCAGAAGCATCTACCTCTGGCCAAGACATTGTACAAGGCAAGACCAAAACCCAAATGCCAAAAGGTCGTCAAACTCAAAGTGGTCCACTTCTACCCGGTATTGTGCTTAGTCATTCTTTATCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAATTCAACCATCTGCTGAAAAAAATCGTCGAGAAGCACGGCAAGCTCCAAGCTTCAGTGGTCCACTAATGCTGCCAAACCGTGCCTCAGCAAACAGCCTATCAGCTCCCATAAAACCTTCTGGAGGGTTTAGAGATTCAATGGATGACAAATCAAAAGCTAATCTCGTACAAATTAAGGGGCGTTTTTCAGTGACTTCAGAGAACCTAGATCTCGTAAAGGATATTCCATTGAGCACGGTTTCACGGCGGTCTTCACAGAACTCACCTCTACGAAAGTCGGCTAGTGTTGGTGATTGGATATTTGATGCCAAGCAGCCTGTTAGCCAACCCCCTAAGGAGGCCAACATCAACGTGCCTACATCAATTCTTATTCCTCATCTTCAGAATCTTTTCCATCAGACCTCAATTCAACAGGATCTTATAGTGAACTTATTGAATAGCTTACAAACAGCAGACGTGGCTGATGCAACTCAAAATGGAAAGTTGCCTCCATTGCCTCGAAGCTCAGAGAATAATGGAAGTGCTGAAACAGCAGCGGTTGAGAGAGAGCGTTTACTGTCACGAAAGGTCTCCGAACTTCAAGCTAGAATGACGCATCTGACTTATGAATTGACCGCTGAAAAGCTGAAATACATTCAATTACAAGAGCAGTTCAACTCAGCCTCCAGTCAGGAAGAAAATGAGATCAAGAGGGAAGAGAATGTCTGA | 2592 | 43.63 | MGRMGGRQRTYSANSTDYKLIEEIGYGASATVFRAIYTPSNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNLVRAYCSFVVERNLWVVMPFMAEGSCLHLMKTAYSDGFEEVAIGSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGSVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKVLDPSIFRIQACNAVVSAITCFPNSHCRKDALERRRGTKDLEKRTTRKILEGSRNSDLEIPPPMKNHLVRNGKKTNKVNRLTVTKGSDKVLPKSLLVLFERVTSWVWFRSNLGSFGSAVYHPKEDCTPLWGESMADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPTADKLLKHSFFKNAKPPELSLKKLFANLPPLSHRVKDLQLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNDDMAEMKEEEENINSCSVKDAFCSQYSLRNFNSCNESSQDEHGVGASGQGLPQVECLNKKGKFMESDMLKAGFQEKTGWKRNGTSTEAEASTSGQDIVQGKTKTQMPKGRQTQSGPLLPGIVLSHSLSERVRGSERFDSEIQPSAEKNRREARQAPSFSGPLMLPNRASANSLSAPIKPSGGFRDSMDDKSKANLVQIKGRFSVTSENLDLVKDIPLSTVSRRSSQNSPLRKSASVGDWIFDAKQPVSQPPKEANINVPTSILIPHLQNLFHQTSIQQDLIVNLLNSLQTADVADATQNGKLPPLPRSSENNGSAETAAVERERLLSRKVSELQARMTHLTYELTAEKLKYIQLQEQFNSASSQEENEIKREENV | 863 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 47648500 | 47662615 | - | Maker00021275 | Lcy6g2295 | 636739 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy6g2295 | 863 | Gene3D | Transferase(Phosphotransferase) domain 1 | 313 | 428 | - | - | |
Lcy6g2295 | 863 | Coils | Coil | 477 | 497 | - | - | |
Lcy6g2295 | 863 | ProSitePatterns | Protein kinases ATP-binding region signature. | 24 | 47 | IPR017441 | GO:0005524(InterPro) | |
Lcy6g2295 | 863 | MobiDBLite | consensus disorder prediction | 785 | 804 | - | - | |
Lcy6g2295 | 863 | SUPERFAMILY | Protein kinase-like (PK-like) | 315 | 468 | IPR011009 | - | |
Lcy6g2295 | 863 | ProSiteProfiles | Protein kinase domain profile. | 18 | 413 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy6g2295 | 863 | SMART | serkin_6 | 18 | 413 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy6g2295 | 863 | Pfam | Protein kinase domain | 18 | 200 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy6g2295 | 863 | Pfam | Protein kinase domain | 333 | 413 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy6g2295 | 863 | Gene3D | Transferase(Phosphotransferase) domain 1 | 99 | 201 | - | - | |
Lcy6g2295 | 863 | CDD | STKc_OSR1_SPAK | 17 | 413 | - | - | |
Lcy6g2295 | 863 | Gene3D | Phosphorylase Kinase; domain 1 | 7 | 95 | - | - | |
Lcy6g2295 | 863 | FunFam | Serine/threonine-protein kinase BLUS1 | 7 | 95 | - | - | |
Lcy6g2295 | 863 | MobiDBLite | consensus disorder prediction | 785 | 807 | - | - | |
Lcy6g2295 | 863 | PANTHER | SERINE/THREONINE-PROTEIN KINASE FRAY2 | 9 | 201 | IPR047173 | GO:0043539(InterPro) | |
Lcy6g2295 | 863 | SUPERFAMILY | Protein kinase-like (PK-like) | 17 | 201 | IPR011009 | - | |
Lcy6g2295 | 863 | MobiDBLite | consensus disorder prediction | 617 | 641 | - | - | |
Lcy6g2295 | 863 | MobiDBLite | consensus disorder prediction | 566 | 655 | - | - | |
Lcy6g2295 | 863 | MobiDBLite | consensus disorder prediction | 566 | 600 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g0509 | Lcy-Chr12:6116736 | Lcy6g2295 | Lcy-Chr6:47648500 | 2.11E-117 | dispersed | |
Lcy6g2295 | Lcy-Chr6:47648500 | Lcy9g1314 | Lcy-Chr9:37904579 | 5.17E-44 | dispersed | |
Lcy6g2295 | Lcy-Chr6:47648500 | Lcy13g0258 | Lcy-Chr13:2705695 | 1.48E-22 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66052 | None | None | None | None | Lcy | PK |
Pathway information
