Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2295 ATGGGCAGGATGGGAGGTCGGCAGAGGACTTACAGCGCCAATTCCACGGATTATAAGCTTATTGAAGAGATTGGTTATGGTGCCAGTGCCACTGTTTTTCGAGCGATCTATACTCCCTCTAATGAAGTTGTCGCCATCAAGTGTTTGGATCTTGATCGCTGTAATAGTAATCTAGATGATATACGTAGGGAAGCTCAAACAATGAGTTTGATAGATCATCCGAACCTTGTAAGGGCTTATTGTTCATTTGTTGTTGAACGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAAGGTTCTTGTTTGCACCTAATGAAGACAGCGTACTCAGATGGCTTTGAAGAGGTTGCTATTGGTTCTATCCTGAAAGAAACTCTTAAAGCTTTGGAATACCTTCATCGGCAGGGACACATACATCGGGATGTGAAGGCTGGAAATATACTACTCGATAGTAATGGGTCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGATACAGGTGATAGACAGCGCTCTAGAAATACCTTTGTGGGAACCCCATGCTGGATGGCGCCGGAGGTATTGCAACCAGGAACTGGATATAATTCCAAAGTTCTAGATCCATCTATCTTCAGGATTCAGGCATGCAATGCTGTTGTTTCAGCTATTACATGCTTCCCCAATTCCCATTGTCGCAAAGACGCCCTGGAAAGAAGGAGGGGCACAAAGGATTTGGAAAAAAGGACTACAAGAAAAATCCTTGAAGGGTCGAGGAATTCAGACTTGGAAATCCCTCCTCCCATGAAGAATCACTTAGTTCGAAATGGAAAGAAGACTAACAAGGTCAACCGCCTCACGGTTACAAAAGGCTCTGATAAAGTTCTCCCAAAGAGTCTTCTTGTCCTTTTTGAAAGGGTCACCTCCTGGGTGTGGTTTAGGAGCAACTTGGGATCATTTGGTAGTGCCGTCTACCATCCAAAAGAAGATTGTACACCACTGTGGGGAGAGAGCATGGCCGATATTTGGTCCTTTGGTATTACAGCATTGGAGTTGGCTCATGGACATGCACCATTTTCAAAATATCCTCCAATGAAGGTGCTTCTTATGACCATACAAAATGCTCCTCCTGGGCTGGATTATGATAGAGATAAGAAGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAACCAAGAGGCCAACGGCTGACAAACTTTTAAAGCATTCTTTTTTCAAGAATGCTAAGCCTCCAGAGCTTTCTTTGAAGAAATTATTCGCTAACTTGCCTCCTCTTTCACATCGTGTAAAGGACCTGCAGCTTAAAGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCAGAGCAAGAAGCATTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAACTTTGATGTCGAGGATTTGAAAGCCCAAGCTTCCCTGGTGAATGATGATATGGCAGAGATGAAGGAAGAGGAGGAGAATATAAATTCTTGTAGTGTTAAGGATGCCTTTTGTTCTCAATATAGTTTGAGGAATTTCAATTCATGTAATGAATCATCTCAGGATGAGCATGGTGTCGGGGCAAGTGGTCAGGGATTGCCACAAGTGGAGTGCTTGAACAAAAAGGGTAAGTTTATGGAAAGTGATATGCTGAAAGCTGGGTTCCAAGAAAAAACTGGATGGAAGAGAAATGGAACTAGCACTGAAGCAGAAGCATCTACCTCTGGCCAAGACATTGTACAAGGCAAGACCAAAACCCAAATGCCAAAAGGTCGTCAAACTCAAAGTGGTCCACTTCTACCCGGTATTGTGCTTAGTCATTCTTTATCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAATTCAACCATCTGCTGAAAAAAATCGTCGAGAAGCACGGCAAGCTCCAAGCTTCAGTGGTCCACTAATGCTGCCAAACCGTGCCTCAGCAAACAGCCTATCAGCTCCCATAAAACCTTCTGGAGGGTTTAGAGATTCAATGGATGACAAATCAAAAGCTAATCTCGTACAAATTAAGGGGCGTTTTTCAGTGACTTCAGAGAACCTAGATCTCGTAAAGGATATTCCATTGAGCACGGTTTCACGGCGGTCTTCACAGAACTCACCTCTACGAAAGTCGGCTAGTGTTGGTGATTGGATATTTGATGCCAAGCAGCCTGTTAGCCAACCCCCTAAGGAGGCCAACATCAACGTGCCTACATCAATTCTTATTCCTCATCTTCAGAATCTTTTCCATCAGACCTCAATTCAACAGGATCTTATAGTGAACTTATTGAATAGCTTACAAACAGCAGACGTGGCTGATGCAACTCAAAATGGAAAGTTGCCTCCATTGCCTCGAAGCTCAGAGAATAATGGAAGTGCTGAAACAGCAGCGGTTGAGAGAGAGCGTTTACTGTCACGAAAGGTCTCCGAACTTCAAGCTAGAATGACGCATCTGACTTATGAATTGACCGCTGAAAAGCTGAAATACATTCAATTACAAGAGCAGTTCAACTCAGCCTCCAGTCAGGAAGAAAATGAGATCAAGAGGGAAGAGAATGTCTGA 2592 43.63 MGRMGGRQRTYSANSTDYKLIEEIGYGASATVFRAIYTPSNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNLVRAYCSFVVERNLWVVMPFMAEGSCLHLMKTAYSDGFEEVAIGSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGSVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKVLDPSIFRIQACNAVVSAITCFPNSHCRKDALERRRGTKDLEKRTTRKILEGSRNSDLEIPPPMKNHLVRNGKKTNKVNRLTVTKGSDKVLPKSLLVLFERVTSWVWFRSNLGSFGSAVYHPKEDCTPLWGESMADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPTADKLLKHSFFKNAKPPELSLKKLFANLPPLSHRVKDLQLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNDDMAEMKEEEENINSCSVKDAFCSQYSLRNFNSCNESSQDEHGVGASGQGLPQVECLNKKGKFMESDMLKAGFQEKTGWKRNGTSTEAEASTSGQDIVQGKTKTQMPKGRQTQSGPLLPGIVLSHSLSERVRGSERFDSEIQPSAEKNRREARQAPSFSGPLMLPNRASANSLSAPIKPSGGFRDSMDDKSKANLVQIKGRFSVTSENLDLVKDIPLSTVSRRSSQNSPLRKSASVGDWIFDAKQPVSQPPKEANINVPTSILIPHLQNLFHQTSIQQDLIVNLLNSLQTADVADATQNGKLPPLPRSSENNGSAETAAVERERLLSRKVSELQARMTHLTYELTAEKLKYIQLQEQFNSASSQEENEIKREENV 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47648500 47662615 - Maker00021275 Lcy6g2295 636739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2295 863 Gene3D Transferase(Phosphotransferase) domain 1 313 428 - -
Lcy6g2295 863 Coils Coil 477 497 - -
Lcy6g2295 863 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Lcy6g2295 863 MobiDBLite consensus disorder prediction 785 804 - -
Lcy6g2295 863 SUPERFAMILY Protein kinase-like (PK-like) 315 468 IPR011009 -
Lcy6g2295 863 ProSiteProfiles Protein kinase domain profile. 18 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g2295 863 SMART serkin_6 18 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g2295 863 Pfam Protein kinase domain 18 200 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g2295 863 Pfam Protein kinase domain 333 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g2295 863 Gene3D Transferase(Phosphotransferase) domain 1 99 201 - -
Lcy6g2295 863 CDD STKc_OSR1_SPAK 17 413 - -
Lcy6g2295 863 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
Lcy6g2295 863 FunFam Serine/threonine-protein kinase BLUS1 7 95 - -
Lcy6g2295 863 MobiDBLite consensus disorder prediction 785 807 - -
Lcy6g2295 863 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 9 201 IPR047173 GO:0043539(InterPro)
Lcy6g2295 863 SUPERFAMILY Protein kinase-like (PK-like) 17 201 IPR011009 -
Lcy6g2295 863 MobiDBLite consensus disorder prediction 617 641 - -
Lcy6g2295 863 MobiDBLite consensus disorder prediction 566 655 - -
Lcy6g2295 863 MobiDBLite consensus disorder prediction 566 600 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0509 Lcy-Chr12:6116736 Lcy6g2295 Lcy-Chr6:47648500 2.11E-117 dispersed
Lcy6g2295 Lcy-Chr6:47648500 Lcy9g1314 Lcy-Chr9:37904579 5.17E-44 dispersed
Lcy6g2295 Lcy-Chr6:47648500 Lcy13g0258 Lcy-Chr13:2705695 1.48E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66052 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2295 - - - 0.0