Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2295 ATGGGCAGGATGGGAGGTCGGCAGAGGACTTACAGCGCCAATTCCACGGATTATAAGCTTATTGAAGAGATTGGTTATGGTGCCAGTGCCACTGTTTTTCGAGCGATCTATACTCCCTCTAATGAAGTTGTCGCCATCAAGTGTTTGGATCTTGATCGCTGTAATAGTAATCTAGATGATATACGTAGGGAAGCTCAAACAATGAGTTTGATAGATCATCCGAACCTTGTAAGGGCTTATTGTTCATTTGTTGTTGAACGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAAGGTTCTTGTTTGCACCTAATGAAGACAGCGTACTCAGATGGCTTTGAAGAGGTTGCTATTGGTTCTATCCTGAAAGAAACTCTTAAAGCTTTGGAATACCTTCATCGGCAGGGACACATACATCGGGATGTGAAGGCTGGAAATATACTACTCGATAGTAATGGGTCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGATACAGGTGATAGACAGCGCTCTAGAAATACCTTTGTGGGAACCCCATGCTGGATGGCGCCGGAGGTATTGCAACCAGGAACTGGATATAATTCCAAAGTTCTAGATCCATCTATCTTCAGGATTCAGGCATGCAATGCTGTTGTTTCAGCTATTACATGCTTCCCCAATTCCCATTGTCGCAAAGACGCCCTGGAAAGAAGGAGGGGCACAAAGGATTTGGAAAAAAGGACTACAAGAAAAATCCTTGAAGGGTCGAGGAATTCAGACTTGGAAATCCCTCCTCCCATGAAGAATCACTTAGTTCGAAATGGAAAGAAGACTAACAAGGTCAACCGCCTCACGGTTACAAAAGGCTCTGATAAAGTTCTCCCAAAGAGTCTTCTTGTCCTTTTTGAAAGGGTCACCTCCTGGGTGTGGTTTAGGAGCAACTTGGGATCATTTGGTAGTGCCGTCTACCATCCAAAAGAAGATTGTACACCACTGTGGGGAGAGAGCATGGCCGATATTTGGTCCTTTGGTATTACAGCATTGGAGTTGGCTCATGGACATGCACCATTTTCAAAATATCCTCCAATGAAGGTGCTTCTTATGACCATACAAAATGCTCCTCCTGGGCTGGATTATGATAGAGATAAGAAGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAACCAAGAGGCCAACGGCTGACAAACTTTTAAAGCATTCTTTTTTCAAGAATGCTAAGCCTCCAGAGCTTTCTTTGAAGAAATTATTCGCTAACTTGCCTCCTCTTTCACATCGTGTAAAGGACCTGCAGCTTAAAGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCAGAGCAAGAAGCATTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAACTTTGATGTCGAGGATTTGAAAGCCCAAGCTTCCCTGGTGAATGATGATATGGCAGAGATGAAGGAAGAGGAGGAGAATATAAATTCTTGTAGTGTTAAGGATGCCTTTTGTTCTCAATATAGTTTGAGGAATTTCAATTCATGTAATGAATCATCTCAGGATGAGCATGGTGTCGGGGCAAGTGGTCAGGGATTGCCACAAGTGGAGTGCTTGAACAAAAAGGGTAAGTTTATGGAAAGTGATATGCTGAAAGCTGGGTTCCAAGAAAAAACTGGATGGAAGAGAAATGGAACTAGCACTGAAGCAGAAGCATCTACCTCTGGCCAAGACATTGTACAAGGCAAGACCAAAACCCAAATGCCAAAAGGTCGTCAAACTCAAAGTGGTCCACTTCTACCCGGTATTGTGCTTAGTCATTCTTTATCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAATTCAACCATCTGCTGAAAAAAATCGTCGAGAAGCACGGCAAGCTCCAAGCTTCAGTGGTCCACTAATGCTGCCAAACCGTGCCTCAGCAAACAGCCTATCAGCTCCCATAAAACCTTCTGGAGGGTTTAGAGATTCAATGGATGACAAATCAAAAGCTAATCTCGTACAAATTAAGGGGCGTTTTTCAGTGACTTCAGAGAACCTAGATCTCGTAAAGGATATTCCATTGAGCACGGTTTCACGGCGGTCTTCACAGAACTCACCTCTACGAAAGTCGGCTAGTGTTGGTGATTGGATATTTGATGCCAAGCAGCCTGTTAGCCAACCCCCTAAGGAGGCCAACATCAACGTGCCTACATCAATTCTTATTCCTCATCTTCAGAATCTTTTCCATCAGACCTCAATTCAACAGGATCTTATAGTGAACTTATTGAATAGCTTACAAACAGCAGACGTGGCTGATGCAACTCAAAATGGAAAGTTGCCTCCATTGCCTCGAAGCTCAGAGAATAATGGAAGTGCTGAAACAGCAGCGGTTGAGAGAGAGCGTTTACTGTCACGAAAGGTCTCCGAACTTCAAGCTAGAATGACGCATCTGACTTATGAATTGACCGCTGAAAAGCTGAAATACATTCAATTACAAGAGCAGTTCAACTCAGCCTCCAGTCAGGAAGAAAATGAGATCAAGAGGGAAGAGAATGTCTGA 2592 43.63 MGRMGGRQRTYSANSTDYKLIEEIGYGASATVFRAIYTPSNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNLVRAYCSFVVERNLWVVMPFMAEGSCLHLMKTAYSDGFEEVAIGSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGSVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKVLDPSIFRIQACNAVVSAITCFPNSHCRKDALERRRGTKDLEKRTTRKILEGSRNSDLEIPPPMKNHLVRNGKKTNKVNRLTVTKGSDKVLPKSLLVLFERVTSWVWFRSNLGSFGSAVYHPKEDCTPLWGESMADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPTADKLLKHSFFKNAKPPELSLKKLFANLPPLSHRVKDLQLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNDDMAEMKEEEENINSCSVKDAFCSQYSLRNFNSCNESSQDEHGVGASGQGLPQVECLNKKGKFMESDMLKAGFQEKTGWKRNGTSTEAEASTSGQDIVQGKTKTQMPKGRQTQSGPLLPGIVLSHSLSERVRGSERFDSEIQPSAEKNRREARQAPSFSGPLMLPNRASANSLSAPIKPSGGFRDSMDDKSKANLVQIKGRFSVTSENLDLVKDIPLSTVSRRSSQNSPLRKSASVGDWIFDAKQPVSQPPKEANINVPTSILIPHLQNLFHQTSIQQDLIVNLLNSLQTADVADATQNGKLPPLPRSSENNGSAETAAVERERLLSRKVSELQARMTHLTYELTAEKLKYIQLQEQFNSASSQEENEIKREENV 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47648500 47662615 - Maker00021275 Lcy6g2295 636739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2295 863 Gene3D Transferase(Phosphotransferase) domain 1 313 428 - -
Lcy6g2295 863 Coils Coil 477 497 - -
Lcy6g2295 863 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Lcy6g2295 863 MobiDBLite consensus disorder prediction 785 804 - -
Lcy6g2295 863 SUPERFAMILY Protein kinase-like (PK-like) 315 468 IPR011009 -
Lcy6g2295 863 ProSiteProfiles Protein kinase domain profile. 18 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g2295 863 SMART serkin_6 18 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g2295 863 Pfam Protein kinase domain 18 200 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g2295 863 Pfam Protein kinase domain 333 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g2295 863 Gene3D Transferase(Phosphotransferase) domain 1 99 201 - -
Lcy6g2295 863 CDD STKc_OSR1_SPAK 17 413 - -
Lcy6g2295 863 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
Lcy6g2295 863 FunFam Serine/threonine-protein kinase BLUS1 7 95 - -
Lcy6g2295 863 MobiDBLite consensus disorder prediction 785 807 - -
Lcy6g2295 863 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 9 201 IPR047173 GO:0043539(InterPro)
Lcy6g2295 863 SUPERFAMILY Protein kinase-like (PK-like) 17 201 IPR011009 -
Lcy6g2295 863 MobiDBLite consensus disorder prediction 617 641 - -
Lcy6g2295 863 MobiDBLite consensus disorder prediction 566 655 - -
Lcy6g2295 863 MobiDBLite consensus disorder prediction 566 600 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2295 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0509 Lcy-Chr12:6116736 Lcy6g2295 Lcy-Chr6:47648500 2.11E-117 dispersed
Lcy6g2295 Lcy-Chr6:47648500 Lcy9g1314 Lcy-Chr9:37904579 5.17E-44 dispersed
Lcy6g2295 Lcy-Chr6:47648500 Lcy13g0258 Lcy-Chr13:2705695 1.48E-22 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy9g1314 . 1 697 MAP Kinase Kinase Kinase Kinase AT1G53165 62.0 1.8e-220 763.1
Lcy7g0345 . 268 525 MAP Kinase Kinase Kinase Kinase AT1G53165 51.4 1.6e-64 245.0
Lcy9g1314 . 1 693 MAP Kinase Kinase Kinase Kinase AT3G15220 64.6 2.0e-232 802.7
Lcy7g0345 . 268 525 MAP Kinase Kinase Kinase Kinase AT3G15220 51.0 9.6e-65 245.7
Lcy7g0345 . 4 909 MAP Kinase Kinase Kinase Kinase AT1G69220 55.9 5.1e-235 811.6
Lcy9g1314 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 4.1e-67 253.8
Lcy10g1923 . 122 686 MAP Kinase Kinase Kinase Kinase AT5G14720 66.9 5.8e-216 748.0
Lcy6g2295 . 7 853 MAP Kinase Kinase Kinase Kinase AT4G24100 54.8 6.9e-231 797.7
Lcy10g1923 . 127 514 MAP Kinase Kinase Kinase Kinase AT4G24100 60.2 1.6e-134 477.6
Lcy6g2295 . 11 854 MAP Kinase Kinase Kinase Kinase AT4G10730 55.0 2.3e-231 799.3
Lcy10g1923 . 122 490 MAP Kinase Kinase Kinase Kinase AT1G70430 69.6 3.0e-147 519.6
Lcy12g0509 . 1 658 MAP Kinase Kinase Kinase Kinase AT1G79640 57.7 7.0e-206 714.5
Lcy10g1923 . 127 683 MAP Kinase Kinase Kinase Kinase AT1G79640 50.9 5.4e-150 528.9
Lcy10g1923 . 122 455 MAP Kinase Kinase Kinase Kinase AT1G23700 58.5 5.6e-104 375.6
Lcy11g1629 . 33 492 MAP Kinase Kinase Kinase Kinase AT4G14480 58.4 7.3e-144 508.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005064 3 0 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66052 None None None None Lcy PK