Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2309 ATGGCTTCCTCCATTTCTACTTCTCTTCTTCTTCTTCTCTTCCTCTTCTTCCCTTTCTTCTCAGGTATTCCCTTTCTTTTCATCTGGGTTTCGAGCGTTTTGCTTCAGGGCAGAGTGAAGAAGGAAGGAAGAGACAATTGCTCTCGAGATTGTGTAAATTCAGCAACTTTCACCATTTTAAACCAGTGTGATTACACAGTTTGGCCGGGAGTTTTGTCCGGCGCCGGCACATCGCAGCTCTCCACCACCGGCTTCGTCCTGCAGCCGGGAGAGTCCAACGCCCTCACCATGCCGCCGTCATGGTCCGGCCGCATTTGGGGCCGCACTTATTGCTCCCAAGATGCTGCCGGCAGATTCTCCTGCACCACCGCCGACTGCGGCTCCGGCACCGTTGAATGCAATGGTGCCGGTGCTGCCCCGCCCGCCACCCTCGCTGAGTTCACGTTGAATGGTGCCGGTGGGCTTGATTTCTATGATGTGAGCCTTGTCGATGGCTACAATGTGCCTATGTTAATCACGCCACAAGGTGGAACAGGTGGGGGCAATTGCACGACGATTGGATGTGCGACAGATTTAAATAGCGATTGCCCAGCGGAGCTAAGAGTGGTGGCAAGCGATGCAGATGGGCGGAGCGTGGCATGTAAGAGCGCGTGTGGGGCTTTTGGTGAGCCACAATATTGCTGTAGTGGCGAGTACGGGAACCCGACCACCTGCCAACCGTCGTCGTACTCGGAGTTCTTCAAGTCGGCGTGCCCACAGGCTTATAGCTATGCCTATGATGATGGAACCAGCACCTTCACTTGTGCTGCTGCCAATTACCTCATCACTTTTTGTCCTTCTCTTTCGACCAGGTGCGCGATCTTAACGACAACGATGATTTGTAGCATTTTGACTTAG 897 53.62 MASSISTSLLLLLFLFFPFFSGIPFLFIWVSSVLLQGRVKKEGRDNCSRDCVNSATFTILNQCDYTVWPGVLSGAGTSQLSTTGFVLQPGESNALTMPPSWSGRIWGRTYCSQDAAGRFSCTTADCGSGTVECNGAGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNVPMLITPQGGTGGGNCTTIGCATDLNSDCPAELRVVASDADGRSVACKSACGAFGEPQYCCSGEYGNPTTCQPSSYSEFFKSACPQAYSYAYDDGTSTFTCAAANYLITFCPSLSTRCAILTTTMICSILT 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47837388 47839717 + Maker00021383 Lcy6g2309 636753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2309 298 ProSitePatterns Thaumatin family signature. 117 133 IPR017949 -
Lcy6g2309 298 PANTHER OS03G0233200 PROTEIN 17 279 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Lcy6g2309 298 SMART tha2 57 279 IPR001938 -
Lcy6g2309 298 FunFam THAUMATIN-LIKE PROTEIN 1 55 279 - -
Lcy6g2309 298 Pfam Thaumatin family 61 279 IPR001938 -
Lcy6g2309 298 SUPERFAMILY Osmotin, thaumatin-like protein 55 280 IPR037176 -
Lcy6g2309 298 PRINTS Pathogenesis-related protein signature 56 68 IPR001938 -
Lcy6g2309 298 PRINTS Pathogenesis-related protein signature 269 278 IPR001938 -
Lcy6g2309 298 PRINTS Pathogenesis-related protein signature 104 115 IPR001938 -
Lcy6g2309 298 PRINTS Pathogenesis-related protein signature 156 172 IPR001938 -
Lcy6g2309 298 PIRSF PR5 45 298 IPR001938 -
Lcy6g2309 298 CDD TLP-PA 56 278 - -
Lcy6g2309 298 Gene3D Thaumatin 55 279 IPR037176 -
Lcy6g2309 298 ProSiteProfiles Thaumatin family profile. 54 279 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0625 Lcy-Chr1:5360219 Lcy6g2309 Lcy-Chr6:47837388 1.13E-115 dispersed
Lcy5g0330 Lcy-Chr5:3182999 Lcy6g2309 Lcy-Chr6:47837388 1.11E-85 dispersed
Lcy5g0331 Lcy-Chr5:3196375 Lcy6g2309 Lcy-Chr6:47837388 2.22E-85 dispersed
Lcy6g2001 Lcy-Chr6:42634169 Lcy6g2309 Lcy-Chr6:47837388 4.14E-62 dispersed
Lcy6g2309 Lcy-Chr6:47837388 Lcy8g1242 Lcy-Chr8:38948808 1.18E-103 dispersed
Lcy6g2309 Lcy-Chr6:47837388 Lcy6g2310 Lcy-Chr6:47858166 7.95E-101 tandem
Lcy1g0624 Lcy-Chr1:5344388 Lcy6g2309 Lcy-Chr6:47837388 3.51E-101 wgd
Lcy6g2309 Lcy-Chr6:47837388 Lcy8g1240 Lcy-Chr8:38935845 8.85E-108 wgd
Lcy6g2309 Lcy-Chr6:47837388 Lcy9g2273 Lcy-Chr9:47171367 6.79E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2309 - - - 0.0