Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2314 ATGTCCACTCCCTTGAGGAAAGTGTTTTGTAGAATTTCAGGGCTTGCAACTTCTCTGAGAAGAAACACAGCCCCTCACAGTAGAAGAATCTTTCACAGAGATGTTGAACAGCAAGAGTTTCAATATGCAAGCTCTCATTGTCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGCCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTTCTGACAATTCTCACATGGCATTTCACAAAGAGCTACACAGCACAGTCACTGGACAGCTTAGCCTATGGTCTTCGCCATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGGGTGTCTTGAATTCCACTGCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCTGCGAATCAAGCAGAGCAAGTTGAGTTGTATGAAGCAATGAGGGATGTTACGTGGGCAATGTTTGCAAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTCCAAGCATTCCATCGAGATCATAGAAGCAACAACACATTTTACATTTACTCAGATCTTGCAAACTATTCCATCAGTGCCACTCAATCGTATGATATCAATCGGCTTTCGTCAGGTGAAGGGTGGTCGGAGCCCCCCATTCATGGCAATGTTTCTGCAAAATGGTACAGGGAACCACTTGATCCTATTAGCGGCGAGAAGATCGGGAAAGCGAGGCAAATTCCACCAGAGGACTTGATCAATATTGCTGGCATTTCCCAAGTGGCAGATGGTGTTGCCTCATGGCATGTCACTGTGAGCAAGTACATGGATACACCATTGCTTTCGGCAGCCCTGCCTGTTTCCGACGCTTCTAATGAAAGCATAGTTGCGGTAGTAGGCGTGACAACAGCACTTTATAGCGTAGGCCAACTGATGAAGGAGCTTGTTGAGTTCCACAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCCTGTTAAGAAATACATCAACGGGTCCAAAGCTTATGATGGCTGTCGATTCCCAGGACGACGTGATTCGATTAGGAGCTGAGTGGTTACAGAAAACCTATGGAAACAATTCTCCTCCTGGTCATGAGGTCCATGAAGAGAATGTCAAGCTTGGTGATCAGCAATATTACATCGACTCGTTTTTTCTCAATCTAAAGAAGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTTCAAAACATTGGTTATACTGATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTAACAAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCAAGAAGAAGGGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTGAGGACGCCGATGGCTGCAGTGATTGGTCTTCTGGACATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTTGCAACAGTTACTCAGATTAGAAAATGCTCAACAGCTCTACTTCGACTTCTCAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGACCTGGGACGAGAACTCGAAGGGCTTGTTGATGTGTTCTCTGTACAATGCATTAACCATAATGTGGAGACTGTATTGGATCTCTCTGCTGGTCACATCATTCTTCGAGGGTGGTGTGAGACGTCGAATTCTCTCAACGAAATGGGCAAGTGTTGTATCGATCAGAAGAAATCACGATTTCCTAATCGGACAAAGATGAAACAACAGGGAGACCACACAAAGATTGCCTGCAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGGATTGATCCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCCTCAACAACCCGAACACATGGTGGCACGGGTCTCGGACTATGCATCGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAGAACGGCCCGGGAACATTGATGCGACTTTATTTGGTTCTTAGCACGCCTGTAGATTCGACGGATCATCACTGTCAGCTTGATTTCTCAAAGAATAATGCGGTGGTATTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACATCACAGTGGCTTCGTAGAATCGGATTGCTCACTTTAGAAGCTTCGGAGTGGAATGAACTGACTCTAATCCTTCAGGAACTCTTTCAAGCCAGAAGTTCAGAAACTAAAAAGGGATATAGTCCACAGGATTCACTAGGTGAGCTGTTACGAGCAGAGTTAATGAGAATTAAAGATATGAAAAGCCAAACATTCATCATTGTTGCCGATATTGGGATACTCGACTTGAGCACGGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGCAAAAGCTAAGTTTGCATGGATGTTAAACCACGATACGTCCAACGCCATTAAGATGGAGCTCCGAGGAAAAGGACACATTATAATGAACAATAAGCCACTGTATAAAGCAAAAATGATTCATATTTTGGAAGCTGTTATGAAGGACAGAAATCTTGAGCTGCAGAAGAAAAATGCTTTAAGGACTGCATCAAAGGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCTGATGATTCTGATGTATCTGAACTTGGCAATTCCAACTCCCAGTGTGCAACATTTCAAGTCATAGACGGTCGAGAAGAAACGATAGAGAAACCATGTCAGCCACCATTTCCGCCCGTTAGCAATAGCTCAGTTGAGTTAACTCATGTACATTTGAGCGAGAGTAATATGAGGAATGGCGATCCGTGTGACATGAGGCAAAACTCATCAAAGCCTCAATGTCAAAGTTCTGAATCCAATGGACAGAACTTGGGATTCAACTATCCTAAAAGCCAAGGAGAATCACATTCTAAGAACATTCATGGTAAAAAGTCTCTCGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTCCAAAGAGTAACAACCATAATGCTCGAAAAGATGGGAGCCACGGTCATTGCTGTCGGAGACGGACTGCTGGCTGTAGAAGCTCTGACTGCCATGCTCAGTGCAGAAGAGCAAAGAAGGGAATGCCCCACAAGATATGACTTGATACTAATGGATTGCCAAATGCCAAAGATGGACGGCTATGAAGCGACAAAAGCAATTAGAAAGCTAGAGGTGGGAACGAGCCTTCACGTTCCGATTGTCGCATTGACAGCACACGCAATGTCGTCCGATGAAGCCAAATGCTTGGAGGTGGGAATGGATGCATATCTAACAAAGCCAATTGACTATAAGCTGATGGTATCCACCATACTTTCCCTCACTCAAAGAAGAGGCTAA 3501 43.53 MSTPLRKVFCRISGLATSLRRNTAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWGVLNSTAEITTAQVKLSEYVMRKYSKPANQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATQSYDINRLSSGEGWSEPPIHGNVSAKWYREPLDPISGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSTGPKLMMAVDSQDDVIRLGAEWLQKTYGNNSPPGHEVHEENVKLGDQQYYIDSFFLNLKKLPIVGVVIIPRQYIMGKVDERAFKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDVFSVQCINHNVETVLDLSAGHIILRGWCETSNSLNEMGKCCIDQKKSRFPNRTKMKQQGDHTKIACKKDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVNKMGGEIKVVKKNGPGTLMRLYLVLSTPVDSTDHHCQLDFSKNNAVVLLALRGSMSRLITSQWLRRIGLLTLEASEWNELTLILQELFQARSSETKKGYSPQDSLGELLRAELMRIKDMKSQTFIIVADIGILDLSTDIWKDQLYFLDKYSAKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYKAKMIHILEAVMKDRNLELQKKNALRTASKEGDYHECLEIDSTQFETASSDDSDVSELGNSNSQCATFQVIDGREETIEKPCQPPFPPVSNSSVELTHVHLSESNMRNGDPCDMRQNSSKPQCQSSESNGQNLGFNYPKSQGESHSKNIHGKKSLEGLRILLAEDTPVLQRVTTIMLEKMGATVIAVGDGLLAVEALTAMLSAEEQRRECPTRYDLILMDCQMPKMDGYEATKAIRKLEVGTSLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTQRRG 1166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47924324 47931309 + Maker00021249 Lcy6g2314 636758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2314 1166 CDD HisKA 484 545 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy6g2314 1166 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 626 711 IPR003594 -
Lcy6g2314 1166 FunFam Histidine kinase 1-like protein 471 550 - -
Lcy6g2314 1166 ProSiteProfiles Response regulatory domain profile. 1032 1162 IPR001789 GO:0000160(InterPro)
Lcy6g2314 1166 MobiDBLite consensus disorder prediction 977 1017 - -
Lcy6g2314 1166 Gene3D - 1010 1164 - -
Lcy6g2314 1166 SMART HisKA_10 483 549 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy6g2314 1166 Pfam Response regulator receiver domain 1033 1157 IPR001789 GO:0000160(InterPro)
Lcy6g2314 1166 CDD REC_hyHK_CKI1_RcsC-like 1033 1158 - -
Lcy6g2314 1166 SMART HKATPase_4 559 714 IPR003594 -
Lcy6g2314 1166 MobiDBLite consensus disorder prediction 977 1020 - -
Lcy6g2314 1166 Gene3D - 471 550 - -
Lcy6g2314 1166 SUPERFAMILY CheY-like 1029 1164 IPR011006 -
Lcy6g2314 1166 SMART REC_2 1031 1158 IPR001789 GO:0000160(InterPro)
Lcy6g2314 1166 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 471 550 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy6g2314 1166 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 710 IPR036890 -
Lcy6g2314 1166 ProSiteProfiles Histidine kinase domain profile. 490 714 IPR005467 -
Lcy6g2314 1166 PANTHER TWO-COMPONENT HISTIDINE KINASE 57 587 IPR050736 -
Lcy6g2314 1166 Pfam His Kinase A (phospho-acceptor) domain 484 549 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy6g2314 1166 Gene3D - 551 715 IPR036890 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1412 Lcy-Chr4:34965530 Lcy6g2314 Lcy-Chr6:47924324 5.74E-15 dispersed
Lcy4g1786 Lcy-Chr4:43923325 Lcy6g2314 Lcy-Chr6:47924324 7.14E-54 dispersed
Lcy6g2314 Lcy-Chr6:47924324 Lcy8g1364 Lcy-Chr8:40370520 1.98E-23 dispersed
Lcy6g2314 Lcy-Chr6:47924324 Lcy13g1199 Lcy-Chr13:28515992 2.20E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20349 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2314 - - - 0.0