Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2314 ATGTCCACTCCCTTGAGGAAAGTGTTTTGTAGAATTTCAGGGCTTGCAACTTCTCTGAGAAGAAACACAGCCCCTCACAGTAGAAGAATCTTTCACAGAGATGTTGAACAGCAAGAGTTTCAATATGCAAGCTCTCATTGTCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGCCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTTCTGACAATTCTCACATGGCATTTCACAAAGAGCTACACAGCACAGTCACTGGACAGCTTAGCCTATGGTCTTCGCCATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGGGTGTCTTGAATTCCACTGCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCTGCGAATCAAGCAGAGCAAGTTGAGTTGTATGAAGCAATGAGGGATGTTACGTGGGCAATGTTTGCAAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTCCAAGCATTCCATCGAGATCATAGAAGCAACAACACATTTTACATTTACTCAGATCTTGCAAACTATTCCATCAGTGCCACTCAATCGTATGATATCAATCGGCTTTCGTCAGGTGAAGGGTGGTCGGAGCCCCCCATTCATGGCAATGTTTCTGCAAAATGGTACAGGGAACCACTTGATCCTATTAGCGGCGAGAAGATCGGGAAAGCGAGGCAAATTCCACCAGAGGACTTGATCAATATTGCTGGCATTTCCCAAGTGGCAGATGGTGTTGCCTCATGGCATGTCACTGTGAGCAAGTACATGGATACACCATTGCTTTCGGCAGCCCTGCCTGTTTCCGACGCTTCTAATGAAAGCATAGTTGCGGTAGTAGGCGTGACAACAGCACTTTATAGCGTAGGCCAACTGATGAAGGAGCTTGTTGAGTTCCACAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCCTGTTAAGAAATACATCAACGGGTCCAAAGCTTATGATGGCTGTCGATTCCCAGGACGACGTGATTCGATTAGGAGCTGAGTGGTTACAGAAAACCTATGGAAACAATTCTCCTCCTGGTCATGAGGTCCATGAAGAGAATGTCAAGCTTGGTGATCAGCAATATTACATCGACTCGTTTTTTCTCAATCTAAAGAAGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTTCAAAACATTGGTTATACTGATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTAACAAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCAAGAAGAAGGGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTGAGGACGCCGATGGCTGCAGTGATTGGTCTTCTGGACATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTTGCAACAGTTACTCAGATTAGAAAATGCTCAACAGCTCTACTTCGACTTCTCAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGACCTGGGACGAGAACTCGAAGGGCTTGTTGATGTGTTCTCTGTACAATGCATTAACCATAATGTGGAGACTGTATTGGATCTCTCTGCTGGTCACATCATTCTTCGAGGGTGGTGTGAGACGTCGAATTCTCTCAACGAAATGGGCAAGTGTTGTATCGATCAGAAGAAATCACGATTTCCTAATCGGACAAAGATGAAACAACAGGGAGACCACACAAAGATTGCCTGCAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGGATTGATCCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCCTCAACAACCCGAACACATGGTGGCACGGGTCTCGGACTATGCATCGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAGAACGGCCCGGGAACATTGATGCGACTTTATTTGGTTCTTAGCACGCCTGTAGATTCGACGGATCATCACTGTCAGCTTGATTTCTCAAAGAATAATGCGGTGGTATTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACATCACAGTGGCTTCGTAGAATCGGATTGCTCACTTTAGAAGCTTCGGAGTGGAATGAACTGACTCTAATCCTTCAGGAACTCTTTCAAGCCAGAAGTTCAGAAACTAAAAAGGGATATAGTCCACAGGATTCACTAGGTGAGCTGTTACGAGCAGAGTTAATGAGAATTAAAGATATGAAAAGCCAAACATTCATCATTGTTGCCGATATTGGGATACTCGACTTGAGCACGGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGCAAAAGCTAAGTTTGCATGGATGTTAAACCACGATACGTCCAACGCCATTAAGATGGAGCTCCGAGGAAAAGGACACATTATAATGAACAATAAGCCACTGTATAAAGCAAAAATGATTCATATTTTGGAAGCTGTTATGAAGGACAGAAATCTTGAGCTGCAGAAGAAAAATGCTTTAAGGACTGCATCAAAGGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCTGATGATTCTGATGTATCTGAACTTGGCAATTCCAACTCCCAGTGTGCAACATTTCAAGTCATAGACGGTCGAGAAGAAACGATAGAGAAACCATGTCAGCCACCATTTCCGCCCGTTAGCAATAGCTCAGTTGAGTTAACTCATGTACATTTGAGCGAGAGTAATATGAGGAATGGCGATCCGTGTGACATGAGGCAAAACTCATCAAAGCCTCAATGTCAAAGTTCTGAATCCAATGGACAGAACTTGGGATTCAACTATCCTAAAAGCCAAGGAGAATCACATTCTAAGAACATTCATGGTAAAAAGTCTCTCGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTCCAAAGAGTAACAACCATAATGCTCGAAAAGATGGGAGCCACGGTCATTGCTGTCGGAGACGGACTGCTGGCTGTAGAAGCTCTGACTGCCATGCTCAGTGCAGAAGAGCAAAGAAGGGAATGCCCCACAAGATATGACTTGATACTAATGGATTGCCAAATGCCAAAGATGGACGGCTATGAAGCGACAAAAGCAATTAGAAAGCTAGAGGTGGGAACGAGCCTTCACGTTCCGATTGTCGCATTGACAGCACACGCAATGTCGTCCGATGAAGCCAAATGCTTGGAGGTGGGAATGGATGCATATCTAACAAAGCCAATTGACTATAAGCTGATGGTATCCACCATACTTTCCCTCACTCAAAGAAGAGGCTAA 3501 43.53 MSTPLRKVFCRISGLATSLRRNTAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWGVLNSTAEITTAQVKLSEYVMRKYSKPANQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATQSYDINRLSSGEGWSEPPIHGNVSAKWYREPLDPISGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSTGPKLMMAVDSQDDVIRLGAEWLQKTYGNNSPPGHEVHEENVKLGDQQYYIDSFFLNLKKLPIVGVVIIPRQYIMGKVDERAFKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDVFSVQCINHNVETVLDLSAGHIILRGWCETSNSLNEMGKCCIDQKKSRFPNRTKMKQQGDHTKIACKKDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVNKMGGEIKVVKKNGPGTLMRLYLVLSTPVDSTDHHCQLDFSKNNAVVLLALRGSMSRLITSQWLRRIGLLTLEASEWNELTLILQELFQARSSETKKGYSPQDSLGELLRAELMRIKDMKSQTFIIVADIGILDLSTDIWKDQLYFLDKYSAKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYKAKMIHILEAVMKDRNLELQKKNALRTASKEGDYHECLEIDSTQFETASSDDSDVSELGNSNSQCATFQVIDGREETIEKPCQPPFPPVSNSSVELTHVHLSESNMRNGDPCDMRQNSSKPQCQSSESNGQNLGFNYPKSQGESHSKNIHGKKSLEGLRILLAEDTPVLQRVTTIMLEKMGATVIAVGDGLLAVEALTAMLSAEEQRRECPTRYDLILMDCQMPKMDGYEATKAIRKLEVGTSLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTQRRG 1166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47924324 47931309 + Maker00021249 Lcy6g2314 636758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2314 1166 CDD HisKA 484 545 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy6g2314 1166 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 626 711 IPR003594 -
Lcy6g2314 1166 FunFam Histidine kinase 1-like protein 471 550 - -
Lcy6g2314 1166 ProSiteProfiles Response regulatory domain profile. 1032 1162 IPR001789 GO:0000160(InterPro)
Lcy6g2314 1166 MobiDBLite consensus disorder prediction 977 1017 - -
Lcy6g2314 1166 Gene3D - 1010 1164 - -
Lcy6g2314 1166 SMART HisKA_10 483 549 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy6g2314 1166 Pfam Response regulator receiver domain 1033 1157 IPR001789 GO:0000160(InterPro)
Lcy6g2314 1166 CDD REC_hyHK_CKI1_RcsC-like 1033 1158 - -
Lcy6g2314 1166 SMART HKATPase_4 559 714 IPR003594 -
Lcy6g2314 1166 MobiDBLite consensus disorder prediction 977 1020 - -
Lcy6g2314 1166 Gene3D - 471 550 - -
Lcy6g2314 1166 SUPERFAMILY CheY-like 1029 1164 IPR011006 -
Lcy6g2314 1166 SMART REC_2 1031 1158 IPR001789 GO:0000160(InterPro)
Lcy6g2314 1166 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 471 550 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy6g2314 1166 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 710 IPR036890 -
Lcy6g2314 1166 ProSiteProfiles Histidine kinase domain profile. 490 714 IPR005467 -
Lcy6g2314 1166 PANTHER TWO-COMPONENT HISTIDINE KINASE 57 587 IPR050736 -
Lcy6g2314 1166 Pfam His Kinase A (phospho-acceptor) domain 484 549 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy6g2314 1166 Gene3D - 551 715 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2314 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1412 Lcy-Chr4:34965530 Lcy6g2314 Lcy-Chr6:47924324 5.74E-15 dispersed
Lcy4g1786 Lcy-Chr4:43923325 Lcy6g2314 Lcy-Chr6:47924324 7.14E-54 dispersed
Lcy6g2314 Lcy-Chr6:47924324 Lcy8g1364 Lcy-Chr8:40370520 1.98E-23 dispersed
Lcy6g2314 Lcy-Chr6:47924324 Lcy13g1199 Lcy-Chr13:28515992 2.20E-27 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g2314 . 5 1163 Histidine Kinase Gene Family AT2G17820 62.7 0.0e+00 1379.0
Lcy7g1375 . 28 1013 Histidine Kinase Gene Family AT2G01830 72.0 0.0e+00 1349.3
Lcy10g1594 . 23 1006 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1336.6
Lcy3g1254 . 125 1094 Histidine Kinase Gene Family AT2G01830 52.0 1.1e-272 937.2
Lcy8g1364 . 304 1260 Histidine Kinase Gene Family AT2G01830 51.0 6.2e-257 884.8
Lcy4g0365 . 18 831 Histidine Kinase Gene Family AT2G01830 53.9 3.0e-235 812.8
Lcy9g1919 . 92 1121 Histidine Kinase Gene Family AT5G10720 57.2 9.5e-294 1006.9
Lcy13g2291 . 1 1120 Histidine Kinase Gene Family AT1G09570 80.6 0.0e+00 1841.6
Lcy13g2288 . 1 1129 Histidine Kinase Gene Family AT1G09570 73.9 0.0e+00 1691.8
Lcy4g0391 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.6 0.0e+00 1227.6
Lcy11g1336 . 27 1120 Histidine Kinase Gene Family AT1G09570 54.7 0.0e+00 1203.7
Lcy11g1336 . 13 1061 Histidine Kinase Gene Family AT2G18790 79.0 0.0e+00 1675.6
Lcy5g1781 . 31 1051 Histidine Kinase Gene Family AT2G18790 61.3 0.0e+00 1261.9
Lcy13g2291 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.6 0.0e+00 1094.0
Lcy4g0391 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.4 1.1e-312 1070.1
Lcy13g2288 . 7 1064 Histidine Kinase Gene Family AT2G18790 51.4 8.0e-311 1063.9
Lcy4g0391 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.4 0.0e+00 1387.9
Lcy11g1336 . 21 1122 Histidine Kinase Gene Family AT5G35840 53.0 0.0e+00 1162.1
Lcy13g2291 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1120.9
Lcy11g1336 . 3 1122 Histidine Kinase Gene Family AT4G16250 76.2 0.0e+00 1721.1
Lcy5g1781 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.2 0.0e+00 1300.4
Lcy13g2291 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.7 0.0e+00 1139.8
Lcy4g0391 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1113.2
Lcy13g2288 . 8 1125 Histidine Kinase Gene Family AT4G16250 50.7 0.0e+00 1087.0
Lcy5g1781 . 15 1114 Histidine Kinase Gene Family AT4G18130 63.9 0.0e+00 1401.7
Lcy11g1336 . 3 1120 Histidine Kinase Gene Family AT4G18130 57.5 0.0e+00 1274.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20349 None None None None Lcy TR