Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2318 ATGGGGAAGAACGAATTTCTAACCCCTAAAGCGATTGCAAACAGAATCAAGGCGAAAGGGCTCCAGAAGCTCAGATGGTATTGCCAGATGTGTCAAAAGCAGTGTCGGGATGAGAATGGCTTCAAATGCCACTGTATGAGTGAAAGCCACCAGCGCCAAATGCAGATCTTTGGCCAAAATCCACATCGTATTGTCGAAGGTTACTCCGAAGAGTTTGAGAGATCTTTTATGGAGCACATTAAGCGTAGCCATCGGTTCAGTCGCGTGGCAGCTACAGTGGTCTACAATGAATACATTAACGACAGGCATCATATTCATATGAATTCAACGCAGTGGGCTACTCTCACTGAGTTTGTGAAACATTTGGGTCGAACTGGGCAGTGTAAAGTAGAGGAGACTCCCAAGGGTTGGTTCATTACTTACATAGATAGAGATTCAGAGACGCTTTTTAAAGAGAGAATGAAAAATAAGAGGATGAGGGCAGATTTAGCTGAAGAAGAGAAGCAAGAGAGAGAGATAAAGAGGCAAATTGAGAGGGCTGAGCAATTAGCGCCTTTGGCTTCTGTATCTGCTGAGCCTTTGGAGGCTGAACAAACGAGAGAGTTGAAATTGGAGAGTGGGGTTAAGCTAGGATTTGCTTTGGGAACAACATCAAAATTGAAGGAGAAAGGAGAGAGTTCCAGGGTGGTTTTTGATGAGGATGAGACAGATGAGACTGCCAGGGGGAAACCTGGAGATTCCAAAAACAAGATGGGTAGTGGTGGTTTGTCAGCTTTGGAGGCGTTGATGAGAGAAGAAGAGATGAAGAAGGAGAAGATTAATAGGAAGGATTACTGGCTGTGTGAGGGAATAATTGTAAAGGTCATGAGTAAGAATTTGGCTGAGAAGGGATACTATAAACAGAAGGGAGTTGTACGAAAAGTGATTGATAAATATGTTGGAGAGATTGAAATGCTCGATGGCAAGCATGTGTTGAGAGTTGATCAAGAAGAATTAGAAACAGTGATACCACAAATTGGTGGCTTAGTAAGGATAGTAAATGGGGCATATCGTGGATCAAATGCTAGGTTGTTGGGCGTTGACACTGATAAGTTTTGTGCTAAAGTGCAAATAGAAAAGGGTGTGTACGATGGCAGGGTGCTTAAGGCTGTTGAATATGAAGATATCTGTAAACTTGCATCATAA 1185 42.87 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPHRIVEGYSEEFERSFMEHIKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKHLGRTGQCKVEETPKGWFITYIDRDSETLFKERMKNKRMRADLAEEEKQEREIKRQIERAEQLAPLASVSAEPLEAEQTRELKLESGVKLGFALGTTSKLKEKGESSRVVFDEDETDETARGKPGDSKNKMGSGGLSALEALMREEEMKKEKINRKDYWLCEGIIVKVMSKNLAEKGYYKQKGVVRKVIDKYVGEIEMLDGKHVLRVDQEELETVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAKVQIEKGVYDGRVLKAVEYEDICKLAS 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47970226 47971410 - Maker00021402 Lcy6g2318 636762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2318 394 FunFam DNA/RNA-binding protein KIN17, putative 337 393 - -
Lcy6g2318 394 MobiDBLite consensus disorder prediction 225 254 - -
Lcy6g2318 394 Gene3D - 283 336 - -
Lcy6g2318 394 Gene3D - 337 393 IPR014722 -
Lcy6g2318 394 Gene3D - 60 160 IPR038254 -
Lcy6g2318 394 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Lcy6g2318 394 SMART Kin17_mid_2 52 178 IPR019447 -
Lcy6g2318 394 Pfam KN17 SH3-like C-terminal domain 275 328 IPR041330 -
Lcy6g2318 394 CDD KOW_KIN17 339 392 IPR041995 -
Lcy6g2318 394 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Lcy6g2318 394 Coils Coil 154 183 - -
Lcy6g2318 394 Coils Coil 256 276 - -
Lcy6g2318 394 FunFam DNA/RNA-binding protein kin17-like 283 336 - -
Lcy6g2318 394 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 393 IPR037321 GO:0003690(PANTHER)|GO:0005634(PANTHER)|GO:0006260(PANTHER)|GO:0006974(PANTHER)
Lcy6g2318 394 MobiDBLite consensus disorder prediction 225 245 - -
Lcy6g2318 394 FunFam DNA/RNA-binding protein KIN17, putative 61 160 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2318 K13102 - csv:101216499 738.413