Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2327 ATGTTATCAAGATTGATGAACTTCCTGAGGGCCTGCTGGCAGCCATGTGCTGATTGTCGGTCACGTCGGGGCGGCGGTTCCGATTCAGTTGGCTGCCAAGATGGGCTACTTTGGTACAAGGACCATGGTCACCACATCAGTGGAGAGTTTTCAATGGCTGTTGTTCAGGCCAACAATTTACTTGAGGATCAGAGCCAGCTTGAGTCTGGCCCCTTAAGCTTGCTTGAGTCTGGACCCTATGGAACCTTTGTAGGAATATACGATGGCCATGGTGGCCCCGAGACGTCGCGATTCATATGTGGTAACTTGTTCCAGCACCTCAAAGTGTTTGCCACAGAAGAAAAGGCAATGTCAGTAAATGTGATCAAGAAAGCATTCCAAGCAACAGAAGAGGGGTTTCTCTCTCTTGTCACCAAGCAATGGCCTATGAACCCCCAGATTGCGGCTGTTGGTTCTTGCTGTCTGGTCGGTGTGATTTGCAATGGGAAACTCTACATTGCCAACCTTGGTGATTCCCGAGCAGTGTTGGGAAGGCTCGTTCGGTCCACTGGGGAAGTTCTTCCCATTCAGCTGTCATCAGAGCACAATGTAAGCATACAATCAGTTCGCCAGGAGATGCAGTCTTTGCACCCTGATGACCCCCAGATAGTAGTGTTGAAGCATAATGTATGGCGTGTGAAGGGCTTGATTCAGATTTCTCGGTCAATTGGAGACGTATATCTCAAAAAGCCAGAATTTAACCGGGAACCTTTGTATGCTAAGTTTCGCCTCCGAGAACCCTTCAGCAGGCCTATTTTAAGCTCGGAACCTGCTATCACTGTGCACGAACTCGATCCTAACGATCAATTCCTCATATTTGCTTCTGATGGGCTGTGGGAGCACCTTAGCAACCAGGATGCAGTTGACATAGTTCGCAAGCATCCTCACAGTGGAAGTGCAAGGAGGCTGGTGAAAGCGGCAATGCAGGAAGCAGCTAAGAAGCGAGAAATGCGATACTCAGACTTGAAGAAGATCGACCGTGGGGTTCGGCGTCATTTTCACGACGACACGACGGTGATAGTTGTGTTTCTGGGTTCGAGCAAAGGGAGCAGTGGTACAGGGGGAAGGAGCCCTGTGTTGTCAGTGAGAGGGGGAGGAATGAATCTACCTGCAAAGTCTCTAGCACCTTCAGAGCTAAACAATGCCCCCCAATGA 1194 49.75 MLSRLMNFLRACWQPCADCRSRRGGGSDSVGCQDGLLWYKDHGHHISGEFSMAVVQANNLLEDQSQLESGPLSLLESGPYGTFVGIYDGHGGPETSRFICGNLFQHLKVFATEEKAMSVNVIKKAFQATEEGFLSLVTKQWPMNPQIAAVGSCCLVGVICNGKLYIANLGDSRAVLGRLVRSTGEVLPIQLSSEHNVSIQSVRQEMQSLHPDDPQIVVLKHNVWRVKGLIQISRSIGDVYLKKPEFNREPLYAKFRLREPFSRPILSSEPAITVHELDPNDQFLIFASDGLWEHLSNQDAVDIVRKHPHSGSARRLVKAAMQEAAKKREMRYSDLKKIDRGVRRHFHDDTTVIVVFLGSSKGSSGTGGRSPVLSVRGGGMNLPAKSLAPSELNNAPQ 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48069976 48074790 + Maker00021231 Lcy6g2327 636771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2327 397 MobiDBLite consensus disorder prediction 361 397 - -
Lcy6g2327 397 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169(InterPro)
Lcy6g2327 397 Pfam Protein phosphatase 2C 82 326 IPR001932 -
Lcy6g2327 397 CDD PP2Cc 81 357 IPR001932 -
Lcy6g2327 397 SUPERFAMILY PP2C-like 60 358 IPR036457 -
Lcy6g2327 397 PANTHER PROTEIN PHOSPHATASE 42 356 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy6g2327 397 ProSiteProfiles PPM-type phosphatase domain profile. 46 357 IPR001932 -
Lcy6g2327 397 Gene3D - 39 363 IPR036457 -
Lcy6g2327 397 SMART PP2C_4 42 355 IPR001932 -
Lcy6g2327 397 FunFam Phosphatase 2C family protein 38 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0879 Lcy-Chr3:31657179 Lcy6g2327 Lcy-Chr6:48069976 1.45E-198 dispersed
Lcy6g2327 Lcy-Chr6:48069976 Lcy7g0798 Lcy-Chr7:7713865 4.00E-174 dispersed
Lcy1g0591 Lcy-Chr1:5033129 Lcy6g2327 Lcy-Chr6:48069976 5.23E-218 wgd
Lcy6g2327 Lcy-Chr6:48069976 Lcy8g1268 Lcy-Chr8:39272682 3.56E-212 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2327 K01102 - csv:101220137 715.301