Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2328 ATGGATTTCATAGCCAACCCATTTCGGTTTTCTTCTTCCTCGTCGCCTTCGTTTGGGAATCTCTTTGAGAGAGTTAGAGAAATTTGCTGCTATGCGGTTTCTGCGATTCTTGGCAACGTCTTGTCCGCGATCTTCACTTTCTTCTTCGCCCTAGTGGGGACTTTGCTTGGAGCCATGACTGGAGCATTGATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGAGCTGTTTTTTCAATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAGTCAGATGAATCAGGGATAGGCTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGCGGACGATTAGTTCGAGAACGGATCGGTCCGGCCATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTGCAGAGACAAGCTTTGATGACATCCCGAACATCTTCGACACTGGCAGCGCGAAAGGATTGCCTGGGGACTCGGTTGAGAAAATTCCCAAGATCGTAGTATCTAAGAACAACAGTGTAGATGCTTATGGAGAGAAAGTCTGTTGTTCAGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGCCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTCTTACTCATGGTTCTTGCCCTTTATGCAGAAGGGATCTGTAA 708 45.9 MDFIANPFRFSSSSSPSFGNLFERVREICCYAVSAILGNVLSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGAAETSFDDIPNIFDTGSAKGLPGDSVEKIPKIVVSKNNSVDAYGEKVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48076476 48078028 - Maker00021334 Lcy6g2328 636772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2328 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 234 IPR044523 -
Lcy6g2328 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Lcy6g2328 235 SUPERFAMILY RING/U-box 177 235 - -
Lcy6g2328 235 Pfam YMGG-like Gly-zipper 50 85 IPR027367 -
Lcy6g2328 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Lcy6g2328 235 CDD RING-H2_NIPL1-like 189 232 - -
Lcy6g2328 235 SMART ring_2 190 231 IPR001841 -
Lcy6g2328 235 Pfam Ring finger domain 190 232 IPR001841 -
Lcy6g2328 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2248 Lcy-Chr10:46254690 Lcy6g2328 Lcy-Chr6:48076476 4.77E-11 dispersed
Lcy5g2309 Lcy-Chr5:46035818 Lcy6g2328 Lcy-Chr6:48076476 7.57E-17 dispersed
Lcy6g0581 Lcy-Chr6:5507708 Lcy6g2328 Lcy-Chr6:48076476 4.86E-18 dispersed
Lcy6g2328 Lcy-Chr6:48076476 Lcy9g1702 Lcy-Chr9:42247618 6.54E-15 dispersed
Lcy6g2328 Lcy-Chr6:48076476 Lcy11g1812 Lcy-Chr11:41901307 1.68E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2328 - - - 0.0