Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2333 ATGCCGATTGAGGATGATGTTGAGAGCTGCGGTAGCAGACCCACCGACTCCTCCTCCTCCTCCTCCCATGCCAACCCCAGGCACCACCGCCAGAAGCTCGAGGTTTACACCCAAGTGCTTCGACGGATTCAGGAATCTAATTTCCATGAGGCCAATCTTCCTGGCTTTGATGATCAGCTTTGGCTCCATTTCAATCGCCTCCCTGCTCGTGTGAGAGTTGGAAGTGTTGGGGCATTGTATAACGAGGAGTTTTGTGGTTGCAGATTGTTTAGAGGATCAATTATTGAATACGCATTGGATGTGAATGTCGACAGGGCGGAAGATGTACTAACGCATAAGAGATTACTTCAATTAGCTGTAGACCCTGCTAACCGACCTGCATTTGAAGTTCGTTCTGTTCAGGTTTATCCTTCTGCTAATGAAAACTTCAATTCTTCTTGTTTGGATTCTTCAATGATGGAAGATGCTCAGAGCTCTTTTAATTATTCTAACAAACAGGGGTGCGGCTCAGTAATGAACCATCCACCTCCAACTTTTGGTTCTTCACCTAGTCTTGAAGCTGTTGCACTTCAGGCCAGCAAGTATGGTGTTGAAGATAGGGACAGTGCCCTAAATGTGACACCTTGCTTTTCTCGGCCAATGCATGAGATCACGTTTGCAACAAGTGACAAGCCTAAACTCCTTAGTCAGTTAACTTCCTTACTAGCTGATGTTGGACTTAACATACAAGAAGCTCATGCTTTCTCCTCTGTTGACGGTTTCTCTCTGGATGTTTTTGTTATCGATGGGTGGCCTTATGAGGAAACTGAGGAGCTGAAGAGGGCATTAGAAAAGGAAATTATAAATTTTAAGGAGCAGTATTGGTCAGAAAAGCAGTCCAGTCCTGCTTTGGGTAAGCATAACCAGAATAGAGTTGAATCTTTTCCTAGTTGTGTTGAAATACCTACTGATGGTACTGATGTCTGGGAAATTGACACCAGACAACTAAAATTTGGGAATAAAGTTGGATCCGGGTCATATGGGGACCTGTATCGGGGCACGTATTGTAGTCAGGAAGTAGCTATTAAAGTACTGAAGCCTGAGCGTATTAATGAAGAGATGCTCAAAGAATTCTCTCAAGAAGTTTATATAATGAGGAAAGTTCGGCACAAAAATGTTGTTCAATTCATTGGTGCTTGTACTAAACCTCCAAACCTTTGCATCGTGACAGAGTTTATGTCGAGAGGAAGTATATATGACTTCCTTCATAAGCAAAGAGGTGTATTTAACCTTTCGTCTTTACTTAAAGTAGCCATTGATATTTCAAGAGGGATGAATTATCTGCACCAAAAAAATATAATCCACCGAGACCTCAAGACTGCCAATCTTCTGATGGATGAAAACATGATTCCTTACTCAACCATGACCCCGTTACAAGCAGCGGTTGGCGTGGTCCAGAAGGGACTGCGGCCTACAATGCCCAAGAATGCCCATCCCATTCTTGCTGAACTGCTTGAAAGATGCTGGAGGCAGGATCCAACCGAACGGCCAAACTTCTCTGAAATTTTAGAGATCCTCAAGCAGATGGCTGAGCAGGTCGAAAATAACGGGGAGAATCGACGCAAGAAGGATAAATTATCCGGTGCATTCTTCTCAGCCTTCAAGAGGGGGCACCACTGA 1659 44.0 MPIEDDVESCGSRPTDSSSSSSHANPRHHRQKLEVYTQVLRRIQESNFHEANLPGFDDQLWLHFNRLPARVRVGSVGALYNEEFCGCRLFRGSIIEYALDVNVDRAEDVLTHKRLLQLAVDPANRPAFEVRSVQVYPSANENFNSSCLDSSMMEDAQSSFNYSNKQGCGSVMNHPPPTFGSSPSLEAVALQASKYGVEDRDSALNVTPCFSRPMHEITFATSDKPKLLSQLTSLLADVGLNIQEAHAFSSVDGFSLDVFVIDGWPYEETEELKRALEKEIINFKEQYWSEKQSSPALGKHNQNRVESFPSCVEIPTDGTDVWEIDTRQLKFGNKVGSGSYGDLYRGTYCSQEVAIKVLKPERINEEMLKEFSQEVYIMRKVRHKNVVQFIGACTKPPNLCIVTEFMSRGSIYDFLHKQRGVFNLSSLLKVAIDISRGMNYLHQKNIIHRDLKTANLLMDENMIPYSTMTPLQAAVGVVQKGLRPTMPKNAHPILAELLERCWRQDPTERPNFSEILEILKQMAEQVENNGENRRKKDKLSGAFFSAFKRGHH 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48118881 48125928 + Maker00021245 Lcy6g2333 636777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2333 552 Gene3D Phosphorylase Kinase; domain 1 319 406 - -
Lcy6g2333 552 PANTHER SERINE-THREONINE PROTEIN KINASE 463 523 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lcy6g2333 552 SUPERFAMILY Protein kinase-like (PK-like) 303 519 IPR011009 -
Lcy6g2333 552 SUPERFAMILY ACT-like 214 278 IPR045865 -
Lcy6g2333 552 CDD STKc_MAP3K-like 335 519 - -
Lcy6g2333 552 CDD ACT_TyrKc 214 280 - -
Lcy6g2333 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g2333 552 Gene3D Transferase(Phosphotransferase) domain 1 407 464 - -
Lcy6g2333 552 Gene3D Transferase(Phosphotransferase) domain 1 465 542 - -
Lcy6g2333 552 FunFam Serine/threonine-protein kinase isoform 1 319 407 - -
Lcy6g2333 552 SMART serkin_6 329 523 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g2333 552 ProSiteProfiles Protein kinase domain profile. 329 552 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g2333 552 Coils Coil 266 286 - -
Lcy6g2333 552 Coils Coil 516 536 - -
Lcy6g2333 552 ProSitePatterns Protein kinases ATP-binding region signature. 335 356 IPR017441 GO:0005524(InterPro)
Lcy6g2333 552 MobiDBLite consensus disorder prediction 1 30 - -
Lcy6g2333 552 ProSiteProfiles ACT domain profile. 216 291 IPR002912 -
Lcy6g2333 552 Pfam Protein tyrosine and serine/threonine kinase 329 462 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g2333 552 Pfam Protein tyrosine and serine/threonine kinase 463 519 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g2333 Lcy-Chr6:48118881 Lcy5g0371 Lcy-Chr5:3734716 2.41E-32 dispersed
Lcy10g1341 Lcy-Chr10:36413953 Lcy6g2333 Lcy-Chr6:48118881 2.76E-112 transposed
Lcy3g0858 Lcy-Chr3:30969604 Lcy6g2333 Lcy-Chr6:48118881 2.07E-217 transposed
Lcy6g2333 Lcy-Chr6:48118881 Lcy9g2294 Lcy-Chr9:47336472 1.24E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66053 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2333 - - - 0.0