Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2349 ATGATGGAGTGGGAAAAGCCCGACCACCAGAATCCTTACCACCACCAGAACCCTCCTCTTCGCGACGATCATCTCCATCACCTCACCGGAACCACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTCCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACTCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGTCACAAAATTACTTCTAGACAGCGGTGGACTCCGACACCTGTGCAACTTCAGATCTTGGAACGTATATTCGAGCAAGGGAATGGAACTCCCAGCAAGCAAAAGATCAAAGAGATAACCTCTGAGCTGGGTCAGCATGGCCAAATTTCTGAATCAAATGTCTATAACTGGTTCCAAAACAGGCGCGCTCGATCGAAGAGGAAGCAGCAAAGTACAGCTCCCGCCTATGCTGAATCAGAGGTGGAGACGGAGGTCGAGTCGCCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAAACCTCTGCACCTTTGGGGGAGGACATGTGCTTCCAGAGTCCTGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACAACAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACCGCGAGAAGTTTTAACCAGATGTCCTTTTATGAGGCAGGGAATGAGCAGCTGACAGGAAAGATTGAAACGCCAGAAAACTATAGTCTTTACCAGCAGGCAGAAGGCTACAGCATGACCGAACGACCCTGA 840 48.45 MMEWEKPDHQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYAESEVETEVESPKDKKTKPVDFQTHQTSAPLGEDMCFQSPEMSSELHFLDPNNNKADTLFPSNGSLKTARSFNQMSFYEAGNEQLTGKIETPENYSLYQQAEGYSMTERP 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48271083 48284304 - Maker00021202 Lcy6g2349 636793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2349 279 PANTHER WUSCHEL-RELATED HOMEOBOX 13 28 276 IPR044559 GO:0003700(InterPro)
Lcy6g2349 279 SMART HOX_1 98 165 IPR001356 GO:0003677(InterPro)
Lcy6g2349 279 MobiDBLite consensus disorder prediction 1 26 - -
Lcy6g2349 279 MobiDBLite consensus disorder prediction 158 189 - -
Lcy6g2349 279 CDD homeodomain 100 162 IPR001356 GO:0003677(InterPro)
Lcy6g2349 279 MobiDBLite consensus disorder prediction 175 189 - -
Lcy6g2349 279 Pfam Homeodomain 100 160 IPR001356 GO:0003677(InterPro)
Lcy6g2349 279 SUPERFAMILY Homeodomain-like 96 163 IPR009057 -
Lcy6g2349 279 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677(InterPro)
Lcy6g2349 279 Gene3D - 102 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2349 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g2349 Lcy-Chr6:48271083 Lcy9g2329 Lcy-Chr9:47635407 3.68E-84 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g2383 . 3 201 Wox Gene Family AT3G18010 57.5 1.5e-50 197.6
Lcy2g0387 . 1 156 Wox Gene Family AT3G18010 56.2 9.3e-40 161.8
Lcy6g2349 . 1 276 Wox Gene Family AT4G35550 50.2 1.9e-64 243.4
Lcy6g2349 . 34 160 Wox Gene Family AT1G20700 58.5 1.9e-37 153.3
Lcy13g2095 . 10 164 Wox Gene Family AT1G46480 68.1 5.2e-53 204.9
Lcy5g2383 . 3 201 Wox Gene Family AT3G18010 57.5 1.5e-50 197.6
Lcy2g0387 . 1 156 Wox Gene Family AT3G18010 56.2 9.3e-40 161.8
Lcy13g2095 . 10 164 Wox Gene Family AT1G46480 68.1 5.2e-53 204.9
Lcy6g2349 . 1 276 Wox Gene Family AT4G35550 50.2 1.9e-64 243.4
Lcy6g2349 . 34 160 Wox Gene Family AT1G20700 58.5 1.9e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20351 None None None None Lcy TF