Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2349 ATGATGGAGTGGGAAAAGCCCGACCACCAGAATCCTTACCACCACCAGAACCCTCCTCTTCGCGACGATCATCTCCATCACCTCACCGGAACCACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTCCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACTCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGTCACAAAATTACTTCTAGACAGCGGTGGACTCCGACACCTGTGCAACTTCAGATCTTGGAACGTATATTCGAGCAAGGGAATGGAACTCCCAGCAAGCAAAAGATCAAAGAGATAACCTCTGAGCTGGGTCAGCATGGCCAAATTTCTGAATCAAATGTCTATAACTGGTTCCAAAACAGGCGCGCTCGATCGAAGAGGAAGCAGCAAAGTACAGCTCCCGCCTATGCTGAATCAGAGGTGGAGACGGAGGTCGAGTCGCCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAAACCTCTGCACCTTTGGGGGAGGACATGTGCTTCCAGAGTCCTGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACAACAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACCGCGAGAAGTTTTAACCAGATGTCCTTTTATGAGGCAGGGAATGAGCAGCTGACAGGAAAGATTGAAACGCCAGAAAACTATAGTCTTTACCAGCAGGCAGAAGGCTACAGCATGACCGAACGACCCTGA 840 48.45 MMEWEKPDHQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYAESEVETEVESPKDKKTKPVDFQTHQTSAPLGEDMCFQSPEMSSELHFLDPNNNKADTLFPSNGSLKTARSFNQMSFYEAGNEQLTGKIETPENYSLYQQAEGYSMTERP 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48271083 48284304 - Maker00021202 Lcy6g2349 636793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2349 279 PANTHER WUSCHEL-RELATED HOMEOBOX 13 28 276 IPR044559 GO:0003700(InterPro)
Lcy6g2349 279 SMART HOX_1 98 165 IPR001356 GO:0003677(InterPro)
Lcy6g2349 279 MobiDBLite consensus disorder prediction 1 26 - -
Lcy6g2349 279 MobiDBLite consensus disorder prediction 158 189 - -
Lcy6g2349 279 CDD homeodomain 100 162 IPR001356 GO:0003677(InterPro)
Lcy6g2349 279 MobiDBLite consensus disorder prediction 175 189 - -
Lcy6g2349 279 Pfam Homeodomain 100 160 IPR001356 GO:0003677(InterPro)
Lcy6g2349 279 SUPERFAMILY Homeodomain-like 96 163 IPR009057 -
Lcy6g2349 279 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677(InterPro)
Lcy6g2349 279 Gene3D - 102 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g2349 Lcy-Chr6:48271083 Lcy9g2329 Lcy-Chr9:47635407 3.68E-84 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20351 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2349 - - - 0.0