Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2365 ATGACTCGCTATTTTACGGCTCTCGCGGCTAATACTTCGTCGGCGTCCGCGTCCGCGTCCGCGTCGGCGCCTCCCCCAGAGGCGGTGGCGCTGGAGTCCGACTTCGTTGTGATTCTCGCGGCGCTGCTCTGTGCCCTAATTTGTATGGTAGGGCTCATAGCGGTGGCTCGGTGCGCCTGGCTCCGGCGGGCCGGTGCCGGTGCTGCTGCAGCTAATCAGGCGTCTGCGAATAGGGGACTGAAGAAGAAGATCCTGCAGTCTCTCCCGAAATTCACGTACAAAACGTTAGGGTCCGGCGGAGAGGGGAAATTTGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCGTGGAGGGGGAGGAGATCCGGCAGCTGCCGCAGTGCGGGCATTGCTTCCACGTAAGCTGCGTAGACACGTGGCTGGGGTCCCACTCGTCCTGCCCCTCTTGCCGACAGATTCTGGTGGTGGCGAGATGCCAGAAGTGCGGGCAGTTCCCGGCGGTCGTCCACGGCGGCGGTCACAGCGAGGAGGAGCACAAGAGGAGGGAAGATAACAATGCTAACAACACGGGTTTGGGGTTTTTGCCTTGA 588 61.9 MTRYFTALAANTSSASASASASAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRAGAGAAAANQASANRGLKKKILQSLPKFTYKTLGSGGEGKFAAECAICLAEFVEGEEIRQLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARCQKCGQFPAVVHGGGHSEEEHKRREDNNANNTGLGFLP 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48439518 48440105 + Maker00021347 Lcy6g2365 636809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2365 195 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Lcy6g2365 195 CDD RING-H2_EL5-like 107 150 - -
Lcy6g2365 195 SMART FANCL_C_2 104 158 - -
Lcy6g2365 195 SMART ring_2 108 149 IPR001841 -
Lcy6g2365 195 MobiDBLite consensus disorder prediction 170 195 - -
Lcy6g2365 195 Pfam Ring finger domain 107 150 IPR001841 -
Lcy6g2365 195 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 20 175 IPR052788 -
Lcy6g2365 195 MobiDBLite consensus disorder prediction 171 185 - -
Lcy6g2365 195 FunFam E3 ubiquitin-protein ligase ATL6 68 156 - -
Lcy6g2365 195 SUPERFAMILY RING/U-box 87 156 - -
Lcy6g2365 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 154 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g2365 Lcy-Chr6:48439518 Lcy8g0201 Lcy-Chr8:5032662 6.90E-23 dispersed
Lcy10g2153 Lcy-Chr10:45530013 Lcy6g2365 Lcy-Chr6:48439518 4.15E-26 transposed
Lcy4g0518 Lcy-Chr4:6262193 Lcy6g2365 Lcy-Chr6:48439518 2.81E-71 transposed
Lcy6g2365 Lcy-Chr6:48439518 Lcy9g2343 Lcy-Chr9:47777964 2.39E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2365 - - - 0.0