Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2371 ATGTCGTCGCAACAATCGGGTTTGGATTCTTCAGCTTTTGGTACACAAACTTCGTCCAATCCGATTCCCACGGAAGCTACTCCGGCTCACTTGGATCCCCCCTCCACCTCCTCCACCATCTCTGAGTCTGAAGAAAATCCCTGTTCATCATCTTCACCTTCCTCCACCCCACCTCCGATTCACTTGCCTCTCTCTTGGCCTCCCGATGCCACCCTTTCCCTCCAGTGGATTCACCATCTCATCGCCGCCTTCGACTGGTCTTCCAAAAATTTACCTCCATCCGAGTTTCCTTCCGTCCTTCCCGTCTCCGTTTTCGATGCTCTAGTCCTCACTGCTTCTAAAATCCTCCACAAAGAACCCAATTGCCTCAGAATCCTCGAAGACTCAGTCGCCAGCAGCGACTCCACTGTTGTCGTTGTCGGAGACATCCACGGTCAATTTCACGATCTCCTCTTTCTTCTGCAGGATGCTGGCTTTCCATCTGAAAACCGTTTCTTTGTCTTCAATGGGGATTACGTCGACAGAGGGGCTTGGGGTCTTGAAACATTTTTGCTTTTATTGGCTTGGAAGGTGTTCATGCCACATCGAGTATTTCTTCTTCGTGGAAACCACGAGTCCAAGTACTGCACATCCGTTTATGGTTTTGAGAAGGAAGTGCTAATCAAGTACGGAGACAAAGGTAAGCATGTCTATCGGAAGTGTTTGGGATGTTTCGAAGGGTTGCCTTTGGCCTCCATTATTGCTGGATGTGTATATACGGCTCATGGAGGACTTTTCCGCAGCGTATCAGTTCCTTCATCTAAAAGATCAAAAGGGAAAAAAAATCGTAGAATAAGCTTAAATCCTGAAGCCAACGGGTTATCTCTTGGTTCTTTGGAGGAACTATCCAAAGCCAGAAGATCGGTTCTTGATCCCCCATGGGAAGGCTTGAATTTAATTCCTGGTGATGTTTTGTGGTCTGATCCTTCGATGAATCCTGGTCTCTCCCCAAATAGAGAGAGAGGCATAGGTCTCTTGTGGGGTCCCGATTGCACTGAAGATTTCTTGAAAAAATTCGATCTGAAGTTAATTATCAGATCCCATGAAGGTCCTGATGCTAGAGAAAAAAGGCCCGGTCTTGCAGGAATGGATCAGGGGTACACAATAGATCATGTTGTAGATTCTGGGAAGCTGATTACTTTGTTCAGTGCGCCAGACTATCCACAATTTCAGCTCCACTTCGTTTCTTTCGGTTTTCGTCGTTCGTTATCTGATAGAGAAACCACGGACATCACGACCCTCTTATCTTTGCTTGAGGGGGTTATCATTAGATCGGGCAGGAGGGATATGCATTTTTGGAGTCTCGATCCCTCTGCGGGCTTTTCCTGCAGATCGTTCTTTCAGTTCCTGACCAATCCCTCCCCCTTTAGAGAATCTGTTGTTTCGTGCCTATGGAAGGTTAAAGCTCCGAAGAAAGTCTTATTCTTTGTTTGGCAGGTCATCTTGGTTCGTGTTAACACTTTTGATAGGCTATCGAGAGTGAAGGCTCCTTTAGTTGGCCCTTTCTGTTGCATTCTATGTCGGAAGGCAGAGGAAAATCTTGATCACTTGTTATGGGATTGCGAGTTTGCTCGCTCTGTCTGGAGCCTCTTCTTCGAGGTCTTCGAGTTTTAG 1653 46.82 MSSQQSGLDSSAFGTQTSSNPIPTEATPAHLDPPSTSSTISESEENPCSSSSPSSTPPPIHLPLSWPPDATLSLQWIHHLIAAFDWSSKNLPPSEFPSVLPVSVFDALVLTASKILHKEPNCLRILEDSVASSDSTVVVVGDIHGQFHDLLFLLQDAGFPSENRFFVFNGDYVDRGAWGLETFLLLLAWKVFMPHRVFLLRGNHESKYCTSVYGFEKEVLIKYGDKGKHVYRKCLGCFEGLPLASIIAGCVYTAHGGLFRSVSVPSSKRSKGKKNRRISLNPEANGLSLGSLEELSKARRSVLDPPWEGLNLIPGDVLWSDPSMNPGLSPNRERGIGLLWGPDCTEDFLKKFDLKLIIRSHEGPDAREKRPGLAGMDQGYTIDHVVDSGKLITLFSAPDYPQFQLHFVSFGFRRSLSDRETTDITTLLSLLEGVIIRSGRRDMHFWSLDPSAGFSCRSFFQFLTNPSPFRESVVSCLWKVKAPKKVLFFVWQVILVRVNTFDRLSRVKAPLVGPFCCILCRKAEENLDHLLWDCEFARSVWSLFFEVFEF 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48479526 48488011 + Maker00021260 Lcy6g2371 636815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2371 550 ProSitePatterns Serine/threonine specific protein phosphatases signature. 200 205 IPR006186 GO:0016787(InterPro)
Lcy6g2371 550 Pfam Calcineurin-like phosphoesterase 136 362 IPR004843 GO:0016787(InterPro)
Lcy6g2371 550 SUPERFAMILY Metallo-dependent phosphatases 96 402 IPR029052 -
Lcy6g2371 550 SMART pp2a_7 110 425 IPR006186 GO:0016787(InterPro)
Lcy6g2371 550 PRINTS Serine/threonine phosphatase family signature 390 406 IPR006186 GO:0016787(InterPro)
Lcy6g2371 550 PRINTS Serine/threonine phosphatase family signature 236 262 IPR006186 GO:0016787(InterPro)
Lcy6g2371 550 PRINTS Serine/threonine phosphatase family signature 136 163 IPR006186 GO:0016787(InterPro)
Lcy6g2371 550 PRINTS Serine/threonine phosphatase family signature 199 223 IPR006186 GO:0016787(InterPro)
Lcy6g2371 550 PRINTS Serine/threonine phosphatase family signature 166 193 IPR006186 GO:0016787(InterPro)
Lcy6g2371 550 Pfam zinc-binding in reverse transcriptase 454 541 IPR026960 -
Lcy6g2371 550 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 39 402 IPR051134 -
Lcy6g2371 550 Gene3D - 95 417 IPR029052 -
Lcy6g2371 550 MobiDBLite consensus disorder prediction 1 62 - -
Lcy6g2371 550 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1836 Lcy-Chr10:42667000 Lcy6g2371 Lcy-Chr6:48479526 6.86E-117 dispersed
Lcy6g2371 Lcy-Chr6:48479526 Lcy9g0279 Lcy-Chr9:7145537 6.24E-72 dispersed
Lcy6g2371 Lcy-Chr6:48479526 Lcy6g2118 Lcy-Chr6:44846976 2.43E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2371 K04460 - csv:116402510 701.819