Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy6g2377 | ATGACCTTTGACATGGCTCAGAGTGGTAGGACAATGGGTTCTTCCTTCAACTCCAGCAGCGGCAATGATGATACTCTCCTTCAAAGCTTTGCTGTTGCTTCAAATGGCGATGATTATGATAGTGATGGCTCCAATTTTGCACCCCCTACTCCTACAACCATATCCATGGCAATTCCGGCAGAACTTGCAGGTGTCATACCTTTGATTGACAGATTCCAGGTTGAAGGATTCTTAAGGATGATGCATAAACAGATACATTCTTCTGGAAAACGTGGATTCTTTTCCAAAAGATCTGTAGGTCCTCAAGTTCGGGAAAAATTCACATTTGAGGATATGTTGTGTTTCCAAAAGGATCCGATACCAACTTCGTTACTTAAAATTAACTCGGACCTGGTGAGCCGAGCCATTAAACTATTCCAGATAATCTTGAAGTACATGGGTGTTGACTCTTCTGATAGAGTTAATGCAACAAGCCTAGATGAACGAATTGAGCTTGTTGGAAAACTATACAAGCACACTTTGAAACGTTCAGAGCTTCGAGATGAACTTTTCATCCAAATCTCAAAGCAAACTAGAAATTCTCCTGATAGGCAATATTTGATCAAAGCATGGGAGCTGATGTATCTATCAGCGTCTGTCATGCCACCTAGCAAGGACATTGGTGGATATCTTTCAGAGTATGTTCATAATGTTGCACAAGGCACAAGTACTGATCCAGAGGTTCGGGTTCTTGCATTAAATACACTGAATGCTTTAAAGCGTTGCATGAAGGCTGGTCCCAGGCATATCATACCTGGTCGTGAGGAAATTGAAGCACTTTTAACAGGGCGAAAACTTACAACCATAGTTTTTTTCTTGGATGAAACTTTTGAAGAAATCACATATGATATGACAACAACGGTGGCTGATTCTGTTGAGCAGTGGCAGATTCATCTCCGAGGATCCTCTAGTTCTTTTGCTGCTAGACTTGAGAAATGTATGGACTTCTCGAGGGAAAAGGAACTTTCAGGAATTATAAAACTGTCAGTACACTCTAGCTTCAGTCTTTTTGAATGCCGTAAGATTGTCAGTGGGGCTAAAGCGCTTGATCTAGGAAATGAGGAGTATGTTGGGCTTGATGATAACAAATATATTGGAGATCTGTTAGCAGAATTCAAGGCAGCAAAAGATCGAAGTAAAGGGGAAATTCTGCATTTCAAGCTGACATTTAAAAAGAAGCTATTTCGGGAGTCTGACGAAGCTGTAGCGGACCCAATGTTTATACAGCTATCATATGTTCAGCTGCAGCATGACTATTTATTGGGAAATTATCCGGTTGGAAGGGATGATGCTGCACAACTGTCAGCATTACAAATCCTTGTTGAAATTGGGTTTATTACCAGTCCAGAATCTTGCACTGATTGGAATTCGCTTCTGGAAAGATTCGTACCCAGACAAATTGCCATAACAAGACCAAAGCGAGAGTGGGAGTTGGATATTCTCTCGCGTTTTCGTTCAATGGAGCATTTGACAAAAGATGATGCGAGACAACAATTTCTTCGGATATTGAGAACACTTCCTTATGGGAATTCAGTTTTCTTTGGCGTCCGCAAGATTGATGATCCGATTGGACTTCTTCCTGGGCGAATAATTTTGGGTATCAACAAAAGAGGGGTTCATTTCTTCCGTCCAGTTCCAAAGGAGTATTTGCATTCTGCTGAATTAAGGGATATAATGCAGTTCGGCAGCAGTAACACTGCTGTCTTTTTTAAGATGAGAGTTGCTGGTGTCCTACACATTTTCCAGTTTGAGACCAAGCAGGGAGAAGAAATTTGCATTGCTCTGCAGACACACATAAATGATGTTATGTTGCGTCGCTACTCTAAAGCTAGATCTGCTGCTGTTGGCTCCATGCTTGGAGATTCTTCCTGCAATTTTAAGACTCAAAGTGTGGAAGCATATGAGAAACGAGTTCAAGATTTGAGTAAGGGCATTGAAGAGTCTCAAAGAAATGCTGAAGAGTTGCTGAAGGAATTGCAAGAAAAGAATAAGCAAGAAGTGCTAATGCAAGAAGAATTGGAGACCTTAAAAGAATCCTTGAGATTTGAAAAGCAAAACTTAGCCGAGGCAACACGTAGTCTTGAGAGGCTCAGATCGCAGTATGAAGAAAAAGACAAGGAACACCAGGACATGTTAATGGAAAAAAGGGGTATGGAAGCAAGAATAGCCAAGTTGAGCGCCACAGTGTCGGAAAAAAATGTGAAAAAAGATACGGTTGGAATTGATGAACAGAAACTTCGAGATGAGTTGAGGCTCCGAAATGATGAGTTGCAAGCCACTGAAGAAATTAGAAAGAAACTGGTAAATGAAAAGGTATTGCTGGAACAAAGAATTTTTGGACTTGAAAAGAAGACTAGCGATGAGATGGGACTTCTCCAGAAAAGCTTTGAACACGAACGTAAAGTCTTGAAGCTGAGAGTGGCAGAACTTGAAAAAAAACTTGAAGAAGTAACTCAAGAACTAGCTGTCATGGAGTCAACTCTCGCGATTAGGAACTCTGATTTGGCAGCACTGCAAAACAATTTGAAGGAACTAGAGGAACTACGAGAGATGAAAGAGGACATTGACCGAAAAAATGAGCAAACAGCTAACATTTTGAAGATGCAAGGAGCTCAATTAGCTGAGATGGAAGCACTTTACAAGGAAGAGCAAGTTCTGAGGAAGCGCTATTTCAACATGATAGAAGATATGAAAGGAAAAATTAGAGTTTACTGTCGACTTAGACCTCTTAATGAGAAAGAAATTATTGAAAAAGAAAAAAATGTGCTTGCAAGTCTAGACGAGTTCACAGTTGAACATCCATGGAAAGATGATAAGCTAAAGCAACATATGTATGATCGTGTATTTGATGGCACTGCCTCCCAGGAAGATTATCTAGTCCAGTCTGCTGTAGATGGTTATAATGTCTGCATATTTGCTTATGGTCAAACTGGTTCTGGGAAGACATTTACAATATATGGATCTGAGGACCACCCTGGATTAACACCACGTGCCATTGGAGAACTTTTTAGGATTTTGAAGCGAGATAGTAACAAGTTCTCATTTTCATTGAAGGCGTACATGGTAGAATTATATCAAGATACATTGGTAGATCTTCTTTTGCCGAAGAATGCAAAACGTTTGAAATTAGATATCAAAAAGGATACAAAGCTTAGTTTTGTTGATCTTGCGGGGTCAGAGAGAGTGAAGAAGTCAGGTTCTTCTGGTAGCCAACTTAAGGAAGCTCAAAGCATAAATAAATCACTTTCAGCACTTGGGGATGTTATCAGTTCTTTGTCTTCTGGTGGCCAGCATATACCTTACAGAAATCATAAGCTAACAATGTTGATGAGTGATTCACTGGGTGGTAATGCCAAAACGCTCATGTTTGTCAATGTCTCTCCAGCTGAATCCAACTTAGACGAGACATACAATTCACTCATGTATGCATCCAGAGTTCGATCAATTGTTAATGATCCAAGCAAAAATGTATCATCTAAAGAGGTTGCTCGACTGAAAAAATTGGTTGCTTATTGGAAAGAGCAAGCAGGTAAGAGGGGAGAGGATGATGAGCTGGAAGAAATTCAAGACGAGCGACATACGAAAGAAAAAGCAGACGTTAGATATTCCATGTAG | 3654 | 40.28 | MTFDMAQSGRTMGSSFNSSSGNDDTLLQSFAVASNGDDYDSDGSNFAPPTPTTISMAIPAELAGVIPLIDRFQVEGFLRMMHKQIHSSGKRGFFSKRSVGPQVREKFTFEDMLCFQKDPIPTSLLKINSDLVSRAIKLFQIILKYMGVDSSDRVNATSLDERIELVGKLYKHTLKRSELRDELFIQISKQTRNSPDRQYLIKAWELMYLSASVMPPSKDIGGYLSEYVHNVAQGTSTDPEVRVLALNTLNALKRCMKAGPRHIIPGREEIEALLTGRKLTTIVFFLDETFEEITYDMTTTVADSVEQWQIHLRGSSSSFAARLEKCMDFSREKELSGIIKLSVHSSFSLFECRKIVSGAKALDLGNEEYVGLDDNKYIGDLLAEFKAAKDRSKGEILHFKLTFKKKLFRESDEAVADPMFIQLSYVQLQHDYLLGNYPVGRDDAAQLSALQILVEIGFITSPESCTDWNSLLERFVPRQIAITRPKREWELDILSRFRSMEHLTKDDARQQFLRILRTLPYGNSVFFGVRKIDDPIGLLPGRIILGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICIALQTHINDVMLRRYSKARSAAVGSMLGDSSCNFKTQSVEAYEKRVQDLSKGIEESQRNAEELLKELQEKNKQEVLMQEELETLKESLRFEKQNLAEATRSLERLRSQYEEKDKEHQDMLMEKRGMEARIAKLSATVSEKNVKKDTVGIDEQKLRDELRLRNDELQATEEIRKKLVNEKVLLEQRIFGLEKKTSDEMGLLQKSFEHERKVLKLRVAELEKKLEEVTQELAVMESTLAIRNSDLAALQNNLKELEELREMKEDIDRKNEQTANILKMQGAQLAEMEALYKEEQVLRKRYFNMIEDMKGKIRVYCRLRPLNEKEIIEKEKNVLASLDEFTVEHPWKDDKLKQHMYDRVFDGTASQEDYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSEDHPGLTPRAIGELFRILKRDSNKFSFSLKAYMVELYQDTLVDLLLPKNAKRLKLDIKKDTKLSFVDLAGSERVKKSGSSGSQLKEAQSINKSLSALGDVISSLSSGGQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLMYASRVRSIVNDPSKNVSSKEVARLKKLVAYWKEQAGKRGEDDELEEIQDERHTKEKADVRYSM | 1217 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 48523123 | 48539258 | - | Maker00021381 | Lcy6g2377 | 636821 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy6g2377 | 1217 | ProSiteProfiles | FERM domain profile. | 279 | 620 | IPR000299 | GO:0005856(InterPro) | |
| Lcy6g2377 | 1217 | PRINTS | Kinesin heavy chain signature | 1112 | 1133 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Lcy6g2377 | 1217 | PRINTS | Kinesin heavy chain signature | 979 | 1000 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Lcy6g2377 | 1217 | CDD | FERM_C_KCBP | 523 | 629 | - | - | |
| Lcy6g2377 | 1217 | ProSiteProfiles | MyTH4 domain profile. | 115 | 274 | IPR000857 | GO:0005856(InterPro) | |
| Lcy6g2377 | 1217 | Pfam | FERM central domain | 411 | 527 | IPR019748 | - | |
| Lcy6g2377 | 1217 | Gene3D | MyTH4 domain | 94 | 276 | IPR038185 | - | |
| Lcy6g2377 | 1217 | CDD | FERM_B-lobe | 421 | 519 | IPR019748 | - | |
| Lcy6g2377 | 1217 | SMART | MyTH4_1 | 115 | 274 | IPR000857 | GO:0005856(InterPro) | |
| Lcy6g2377 | 1217 | Coils | Coil | 770 | 797 | - | - | |
| Lcy6g2377 | 1217 | SMART | kinesin_4 | 911 | 1170 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Lcy6g2377 | 1217 | FunFam | Kinesin-like calmodulin-binding protein (ZWICHEL) | 524 | 632 | - | - | |
| Lcy6g2377 | 1217 | ProSiteProfiles | Kinesin motor domain profile. | 913 | 1162 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Lcy6g2377 | 1217 | Gene3D | - | 524 | 631 | IPR011993 | - | |
| Lcy6g2377 | 1217 | Gene3D | - | 1169 | 1213 | - | - | |
| Lcy6g2377 | 1217 | Pfam | Microtubule binding | 894 | 1046 | IPR031852 | GO:0008017(InterPro) | |
| Lcy6g2377 | 1217 | SMART | B41_5 | 275 | 526 | IPR019749 | - | |
| Lcy6g2377 | 1217 | Gene3D | - | 418 | 519 | IPR014352 | - | |
| Lcy6g2377 | 1217 | PANTHER | KINESIN-LIKE PROTEIN KLP-3 | 749 | 1060 | IPR027640 | GO:0003777(InterPro)|GO:0007018(InterPro) | |
| Lcy6g2377 | 1217 | SUPERFAMILY | PH domain-like | 526 | 614 | - | - | |
| Lcy6g2377 | 1217 | Pfam | MyTH4 domain | 168 | 272 | IPR000857 | GO:0005856(InterPro) | |
| Lcy6g2377 | 1217 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Lcy6g2377 | 1217 | Coils | Coil | 806 | 878 | - | - | |
| Lcy6g2377 | 1217 | SUPERFAMILY | Second domain of FERM | 404 | 521 | IPR035963 | - | |
| Lcy6g2377 | 1217 | Pfam | Kinesin motor domain | 1060 | 1162 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Lcy6g2377 | 1217 | Pfam | PTB domain (IRS-1 type) | 537 | 613 | IPR002404 | - | |
| Lcy6g2377 | 1217 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 913 | 1189 | IPR027417 | - | |
| Lcy6g2377 | 1217 | Gene3D | Kinesin motor domain | 1060 | 1168 | IPR036961 | - | |
| Lcy6g2377 | 1217 | FunFam | Kinesin-like calmodulin-binding protein (ZWICHEL) | 94 | 276 | - | - | |
| Lcy6g2377 | 1217 | Coils | Coil | 644 | 727 | - | - | |
| Lcy6g2377 | 1217 | MobiDBLite | consensus disorder prediction | 1189 | 1217 | - | - | |
| Lcy6g2377 | 1217 | SUPERFAMILY | Prismane protein-like | 856 | 917 | IPR011254 | GO:0003824(InterPro)|GO:0016491(InterPro) | |
| Lcy6g2377 | 1217 | Gene3D | Kinesin motor domain | 854 | 1059 | IPR036961 | - | |
| Lcy6g2377 | 1217 | FunFam | Kinesin-like calmodulin binding protein | 409 | 520 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy3g1599 | Lcy-Chr3:43109731 | Lcy6g2377 | Lcy-Chr6:48523123 | 8.02E-12 | dispersed | |
| Lcy6g2377 | Lcy-Chr6:48523123 | Lcy9g1072 | Lcy-Chr9:34600274 | 3.67E-43 | dispersed | |
| Lcy6g2377 | Lcy-Chr6:48523123 | Lcy2g2323 | Lcy-Chr2:48721561 | 2.09E-44 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy6g2377 | K27887 | - | csv:101206704 | 2028.45 |