Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2382 ATGGCCAAATTAACCACAAAATCCCTTCAGTTTTGCTTGTTAATGCTGTTGTTGATCCTGTTTCCGATGGTTCCGGCTAGCTCTCCAGCGGATCTTGTGCAGATAGAGTGCTTGAAGGTACCCTCGTCCGAGTTCTCTAACTCAGTTCTCTCCACCATCGATGTCGTGCGACAGGTTATGGCCATTTTCTCTCCATTCAGTAAATTACTGGGTGATTTACGACTTTCAACCGCCATTTCCGACTGCCTCGATTTGCTTGACTCTTCTGCCGACCAGTTGAGCTGGTCCCTCTCCGCCACCCAAAATCCCAAGGCTAAAAACAACAGCACCGGAGATCTGAGTTCTGATCTAAAGACGTGGCTGAGCGCTGCAGTCGTTAATCCAGAAACATGCATGGATGGATTCGAGGGCACCAATAGCATTGTCAAAGGTCTAGTATCCGCAGGTATTAACCAGTTAACTTCACAGGTCTATGACCTGCTTTCCATGGTAAAATCAATCCCCAATCAGCCGGCTCGAAAATTGAAGAGCGAGTTTCCTTCCTGGGTCAAATCTGAGGACCGGAACCTGCTGCAACTAAATGACTTAGCCGCCGATGCCACAGTGGCCGCCGATGGGACTGGGGATTTCACCAATGTGATGGATGCGGTACTAGCGGCCCCCGACAATAGCATGCGACGTTATGTCATATACATAAAGAGGGGTGTCTATTTCGAGAACGTGGAGATCAAGAAGAAGAAGTGGCATCTCATGATGATTGGAGATGGAATAGATTCCACCATCATATCGGGTAATCGGAGTTTTATAGACGGTTGGACCACATTCCGCTCAGCGACCTTCGCTGTGAGTGGAAGAGGATTCATAGCACGGGACATAACATTCGAGAATACTGCAGGACCAGAGAAACATCAAGCGGTGGCACTTAGATCCGACTCCGATCTGTCGGTGTTTTTTAGATGTCGTATTAGAGGCTTCCAAGACACGCTGTATACGCACACCATGCGCCAATTCTACCGCGAGTGCCAGATCAGTGGCACTGTTGATTTTCTGTTCGGCGATGCCACCGTCGTTTTCCAAAACTGCAGCATCCTCGCGAAGAAGGGTCTTCCCAACCAAAAAAACACCATCACTGCTCAGGGCCGGAAAGACCCAAACCAACCCACCGGCTTCTCCATTCAATTCTGCAACATCTCTGCGGATTCAGACCTTCAACCCTCGGTTAACACTACAGCTACATACCTTGGGAGACCATGGAAGGAATATTCGAGAACCATTATCATGCAGTCATACATGAGCGATGCCATTAGGCCAGAAGGTTGGCTTGAGTGGAACGGTGAATTTGCATTGAATACACTGTTCTACGCTGAGTTTATGAATTATGGACCGGGGGCAGGTTTGGCGAAGCGTGTCCATTGGCCGGGTTACCGCCGACTGAATCAAACGAGTGAAGCTACTAACTTCACCGTGGCTCAATTCATTGAAGGAAACCTGTGGTTGCCGTCCACGGGTGTCAAATACACTGCAGGCTTGGGAGCTAATTAA 1542 48.9 MAKLTTKSLQFCLLMLLLILFPMVPASSPADLVQIECLKVPSSEFSNSVLSTIDVVRQVMAIFSPFSKLLGDLRLSTAISDCLDLLDSSADQLSWSLSATQNPKAKNNSTGDLSSDLKTWLSAAVVNPETCMDGFEGTNSIVKGLVSAGINQLTSQVYDLLSMVKSIPNQPARKLKSEFPSWVKSEDRNLLQLNDLAADATVAADGTGDFTNVMDAVLAAPDNSMRRYVIYIKRGVYFENVEIKKKKWHLMMIGDGIDSTIISGNRSFIDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVFFRCRIRGFQDTLYTHTMRQFYRECQISGTVDFLFGDATVVFQNCSILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFCNISADSDLQPSVNTTATYLGRPWKEYSRTIIMQSYMSDAIRPEGWLEWNGEFALNTLFYAEFMNYGPGAGLAKRVHWPGYRRLNQTSEATNFTVAQFIEGNLWLPSTGVKYTAGLGAN 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48596680 48599334 + Maker00021162 Lcy6g2382 636826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2382 513 PANTHER PECTINESTERASE 48 501 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy6g2382 513 Pfam Plant invertase/pectin methylesterase inhibitor 66 163 IPR006501 GO:0004857(InterPro)
Lcy6g2382 513 Gene3D - 193 510 IPR012334 -
Lcy6g2382 513 Pfam Pectinesterase 199 496 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy6g2382 513 FunFam Pectinesterase 193 510 - -
Lcy6g2382 513 SMART PMEI_2 28 167 IPR006501 GO:0004857(InterPro)
Lcy6g2382 513 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 167 IPR035513 -
Lcy6g2382 513 Gene3D Invertase/pectin methylesterase inhibitor family protein 20 170 IPR035513 -
Lcy6g2382 513 SUPERFAMILY Pectin lyase-like 197 509 IPR011050 -
Lcy6g2382 513 CDD PMEI-like_4 23 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0072 Lcy-Chr6:645012 Lcy6g2382 Lcy-Chr6:48596680 1.95E-143 dispersed
Lcy6g0259 Lcy-Chr6:2255102 Lcy6g2382 Lcy-Chr6:48596680 2.39E-117 dispersed
Lcy6g0260 Lcy-Chr6:2261062 Lcy6g2382 Lcy-Chr6:48596680 4.78E-141 dispersed
Lcy6g1632 Lcy-Chr6:29758567 Lcy6g2382 Lcy-Chr6:48596680 3.00E-71 dispersed
Lcy6g2382 Lcy-Chr6:48596680 Lcy7g0539 Lcy-Chr7:4780217 1.50E-131 dispersed
Lcy6g2382 Lcy-Chr6:48596680 Lcy3g1771 Lcy-Chr3:44975720 6.22E-158 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2382 K01051 - csv:116402691 887.871