Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g2388 ATGGCTTCCTTAATCCAGTACCATGCTTCCCCTACACTGAATCTCTCTCTAATAACCGTCATCGAGCATATTTTCATATTTCCTTGTCATCTGTATCAGGAGGCTCGGTTGTTAGGAAATTCCAAAATTCAGCGACCAGGGTCAGGGGGCGATTTGCCCCAGGGTGGCGAGTACAGCCCTTATCCTATTGCCCGGAGGGTAAATTCCTCCCATACGGTGGTCATGGATGATGACATTGAAAATGCTAGTTTGGGGGCATACCAGGACAGGCAAAGGACTTTCCCTGACATGCGTAGTAAAGTCAACACCCCATTGTGTCCAAAGTGGACATCATCTCGTAATTGGTCTGTGCTTTGCAAGGAAAAGGAAGAAAGTCTGCAACATGTTCTGTTTCTATCTTCCTTCTGTTTACCAAATTCAATGGATGGTTGGCTTGATGAAGGGTTGGTTGCTTGGAACCTTAAAAAGAAAGCTAAGATCGTGGCTAGCTGTGCGTTCAGGGCTACTCTTTGGCTTCTTTGGAAGGAGAGGAATGCTAGAGCTTTTGAAGATAAGATTGCGAGATTGAGAGCACCAAAACCTCTCATTGAGGATGTTCTTTTCATGATATACTCTGTGAAGGACTTTAAGACGGTGAGATATCCAGTTGTTGCTGATTGGCTACTTCTTCTCTTTGCATTTGGATTAATATTCTACATTGGAGCAAGCACTTCTCCTATTATTGTGTTTGTCTTCTCGATTTGCATCGTCAGCTTCTGCTTTTCAATATATCTCACCAAGTGGGTGCTCTCGAAAGATGAAGGGCCACAGGAGATGGCTCAGATCTCAGAGGCAATACGTGATGGGGCAGAAGGTTTCTTTAGGACGCAGTATGGTACCATCTCTAAAATGGCCATGTTACTTGCAGTAGTGATTCTTTGCATATACTTGTTTCGTAGTACTACTCCTCAACAAGAATCTTCTGGAATAGGGAGGTCAACAACTGCTTATATTACTGTTGCAGCATTTCTGTTAGGAGCCTTGTGTTCAGGTATTGCAGGGTATGTTGGAATGTGGGTTTCAGTTCGTGCAAATGTCAGGGTTTCTAGTGCTGCTAGGCGATCTGCGAGGGAGGCATTGCAGATCGCTGTTCGCGCTGGTGGTTTTTCCGCAATTGTTGTTGTTGGAATGGCTGTTATTGGTATAGCCATTTTGTATGCTGCATTTCATGTTTGGTTGGATGTGGGTTCACCAGGTTCAACGAAGGTTACTGACTCCCTATTAGCGAAGTGGCTGTGGCGTTTTCTCCTTGAGTCGTCTCCCTTGTGGTACAAGATAATTGTGAGTAAATATCGTCCTCATCCTTCTGAGTGGTTACTGGGTGGGGTTGGTGGCACGTTTAGAAACCCGTGGAAAGATATTATCATGGAGCTCCCCTCATTTTCTGGTCTTGTGCATCATGTGGTTAGGGATGGAAATCATATGTATTTCTGGGAGGATAAGTGGGTGGGGGATAGCCCTGATCCTTCTGTTGGGTTCTCGTGTAAATCCTACTTTGTTTCTGTGTTGAATCCTCCTCCTTATAGCGAGTCTATCTTCTCTCTTGTGGAAGGGCGGAAGAAGATTTGGATCATATTCTTTGGGGTTGCGATTTCGCTCGCTCTAGTTGGGACCTCTTCTTTGGTGTGTTTGGTGGCAGCGGATCAACTATCCGGATCTGAGAGTGTTGATCGAAGAGTTCCTCCTCAATCCGACTCTCCAGGGCAAAGGAAGATTTTTTTGGTAGGCCGACATGTGTTTATTGGGATCGATGGTTTTGAGGCCAACCCAGGCGAGAGGCGAGGCGAGGTGAAGCTTCAGTGCCTTGAGAGCAACGTTTTTATGTCGCCTCTCGCCTTAAGGCGATTAGGAGACTCGTCGCCTTACAGTGCGCCTTGCGCTTTGAAAATACTGGTTGGCATGAGATACAACGAGTTGAATAGGAAGTTGGCTGAGTGGAGACATCTTCTTGTCTCAAAAGGAGGGTGCCTGACTTTTGTCAATCTTCTCCCTTATGAAAGCCCCTTGGAAGTGCCTCTTCTCCTTGTGGGTTATGGTTTTGGAGCTTCTTTCGTTGCCCTATTTGCTCAGTTGGGTGGTGGTATTTATACAAAAGCTGCTGATGTTGGAGCAGACCTCGTTGGAAAAGTTGAGCAGGGGATACCAGAGGATGATCCAAGAAATCCTGCCGTTATTGCAGATCTGGGGAGAGTAGGGGTGAAGTACAAGGCTGTTGTGAGGGTTGGGGGGAAGAACAAGATGGAGGCGGGTGGGAAGGTTGGGGACAATGTGGGTGACTGTGCTGCTCGAGGTGCAGATCTTTTTGAAAGCATTGCTGCTGAAATCATTAGTGCCATGATACTTGGGGGAACAATGGCTCAACGCTGTAAAATTGAAGATCCATCTGGTTTCATTTTGTTTCCGCTGGTAGTACACTCCTTTGATCTGGTAATTTCATCAATTGGCATTCTCTCTATCAGGAGGGGTACTCGTGAATCTGGTGTGAAGAGTCCCATAGAGGATCCAATGACTATTCTGCAGAGAGGATATTCTGTCACTATCATTTTGGCTGTTCTAACATTTGGTGTGTCTACCCGGTGGTTGCTTCACACTGAACAAGCTCCTTCTGCATGGTTCAACTTTGCCTTGTGTGGCTTGGTTGGTATTATAACGGCTTACATTTTTGTCTGGATCACCAAATACTACACTGACTACAAGCATGAACCCGTTCGTTCATTAGCACTTTCTAGCTCCACAGGCCATGGGACGAACATTATTGCTGGAGTCAGCTTGGGCCTGGAATCAACAGCGCTCCCTGTTCTTGTTATTAGTGTATCTATTGTTTCGGCATTCTGGTTGGGTCACACATCAGGACTTGTGGACGAAGCTGGAAATCCAACAGGTGGGCTATTTGGTACTGCTGTAGCTACAATGGGAATGCTCAGCACTGCTGCCTATGTTCTCACGATGGATATGTTTGGGCCAATAGCTGATAATGCTGGTGGAATTGTTGAGATGAGTCAGCAGCCAGAAAGTGTTCGGGAGATCACTGATCTTCTTGATGCAGTAGGTAACACAACTAAAGCGACCACAAAAGGTTTTGCCATTGGCTCTGCAGCACTTGCATCCTTCCTACTTTTTAGTGCTTATATGGACGAGGTAGCTGCATTTGCTCATGAACCTTTTAAACAGGTAGATATTGCAATTCCAGAAGTTTTTATTGGTGGTTTATTGGGTTCCATGCTTATTTTTCTCTTTAGTGCTTGGGCCTGCTCTGCTGTTGGCCGAACAGCCCAAGAGGTCGTAAAGGAAGTAAGAAGACAGTTCATTGAGAGGCCTGGTATAATGGACTATACGGAGAAACCAGAGTATGGACGTTGCGTTGCTATTGTAGCATCAGCATCTTTAAGGGAGATGATTAAACCTGGTGCTTTGGCTATTATTTCTCCTATGGCAGTTGGTGGGTTTATTTGCTCATATTTTTGGAAATCCTTTGATTTGTTTCTGCTTAATACTGTCATTCACTTGTGGCCTATTTGCTTTGGGGAGAAAGTGGAAGCAGTTGAATTTGCATAA 3594 45.44 MASLIQYHASPTLNLSLITVIEHIFIFPCHLYQEARLLGNSKIQRPGSGGDLPQGGEYSPYPIARRVNSSHTVVMDDDIENASLGAYQDRQRTFPDMRSKVNTPLCPKWTSSRNWSVLCKEKEESLQHVLFLSSFCLPNSMDGWLDEGLVAWNLKKKAKIVASCAFRATLWLLWKERNARAFEDKIARLRAPKPLIEDVLFMIYSVKDFKTVRYPVVADWLLLLFAFGLIFYIGASTSPIIVFVFSICIVSFCFSIYLTKWVLSKDEGPQEMAQISEAIRDGAEGFFRTQYGTISKMAMLLAVVILCIYLFRSTTPQQESSGIGRSTTAYITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYAAFHVWLDVGSPGSTKVTDSLLAKWLWRFLLESSPLWYKIIVSKYRPHPSEWLLGGVGGTFRNPWKDIIMELPSFSGLVHHVVRDGNHMYFWEDKWVGDSPDPSVGFSCKSYFVSVLNPPPYSESIFSLVEGRKKIWIIFFGVAISLALVGTSSLVCLVAADQLSGSESVDRRVPPQSDSPGQRKIFLVGRHVFIGIDGFEANPGERRGEVKLQCLESNVFMSPLALRRLGDSSPYSAPCALKILVGMRYNELNRKLAEWRHLLVSKGGCLTFVNLLPYESPLEVPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLGRVGVKYKAVVRVGGKNKMEAGGKVGDNVGDCAARGADLFESIAAEIISAMILGGTMAQRCKIEDPSGFILFPLVVHSFDLVISSIGILSIRRGTRESGVKSPIEDPMTILQRGYSVTIILAVLTFGVSTRWLLHTEQAPSAWFNFALCGLVGIITAYIFVWITKYYTDYKHEPVRSLALSSSTGHGTNIIAGVSLGLESTALPVLVISVSIVSAFWLGHTSGLVDEAGNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVAAFAHEPFKQVDIAIPEVFIGGLLGSMLIFLFSAWACSAVGRTAQEVVKEVRRQFIERPGIMDYTEKPEYGRCVAIVASASLREMIKPGALAIISPMAVGGFICSYFWKSFDLFLLNTVIHLWPICFGEKVEAVEFA 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48686649 48713221 + Maker00021305 Lcy6g2388 636832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g2388 1197 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 765 1164 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Lcy6g2388 1197 Pfam Inorganic H+ pyrophosphatase 679 741 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Lcy6g2388 1197 Pfam Inorganic H+ pyrophosphatase 765 1163 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Lcy6g2388 1197 Pfam Inorganic H+ pyrophosphatase 249 404 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2327 Lcy-Chr3:50134063 Lcy6g2388 Lcy-Chr6:48686649 0 dispersed
Lcy3g2329 Lcy-Chr3:50173756 Lcy6g2388 Lcy-Chr6:48686649 2.16E-19 dispersed
Lcy4g1797 Lcy-Chr4:44010485 Lcy6g2388 Lcy-Chr6:48686649 2.67E-78 dispersed
Lcy6g2388 Lcy-Chr6:48686649 Lcy9g1255 Lcy-Chr9:37143681 2.44E-32 dispersed
Lcy6g2388 Lcy-Chr6:48686649 Lcy2g2144 Lcy-Chr2:43380188 2.73E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g2388 K23025 - csv:101217198 829.32