Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0008 ATGGATCGATGGAAGAAGGTGAACATCGATTGGAAGGTGTTTCACCTTCGTAAGAGGGAGAATGGGAGGAAAGTGGTAATTGAGGAACGACGAGGATCAAGAATGAGTCGCTTGGATGTGGATGTGGGTACTTTCGCTTGGGTCAGGGATTGCCTCATGGCAATAACGAAGTCTGAAAACCTGAACGGATTTTGGAGGAGGAGGAAACTAGAGACAATGATAATCTTTTTCCAGGTTCTATCCAACAAGAAAGGAAGATTCGGGCTCTTATCTCTAGAATCAGATAGGGGGAGGAAATCTTTTATCTTCATCCCTGAGGGCCCGAATCGCAGAGGTTGGGGGCCGCTTGAGGCAGCCATGACGAATTTGCTTCCCCCACCAAAAGCATCCAACCGGATAGAAAAAGGGCTAGTTAAAGAGAAAGATAGTGATAGTGGGGACGGCCTGATCGAGGAAGGGGCTCGGAACTCCAAATCTTTTGTGGAAATAGTGAGAAAGAATTCAAAGAAAGGAAACGAGGCGATTAAAAAGTCACCGATTGCTAGGGAGCTTGCTTTCGATTGTTCTTCTGCGGTCATCATCGAGAGGGTAAACATCGACATTCAGTGGATGTGTATAAAAGAAGAGTGCTTGAGATTGGCCAAGATATGGTTCATCCTTAAACCCATCTGCGTTAACCTGGCAGTGGGATTATGCGAGAGCGAGAAAGAAGCCAAAGATCTATTCGTTGTGGATCTGTTCGTGTCGTCGTGGGTTTTGTTTCCAGATTTGTTCGTGCTGCCGTGGGTTTCCAGATCTGTTCCAAAGGGAGAGATTCGTGTATCTGTTCAAACGGCGGCCTTGATAAGAACCGGAATAGAACCACAATGTATTACAATACAAAAGGTAAAGGACTACACGATAAATCTAAGTATTCGAGGCAAATCTCTAAAGCCATTTGGTCAAGAGAGATGGGTTTTTGAAGCAAAGGCAGCACAACTTAATTTTCGAGGACAGCAGATATGGTTGACTGCAATGGAAGAGTTGATGTCCAAAGGAATGCAAAATGCCAGTCAGGCGTTGCTTTCTGGATGCTCGGCTGGGGGTCTGGCATCCATACTGCACTGTGATGAATTCCATGAATTATTTCCTAAAACTACTAAAGTAAAATGCTTAAGTGATGCAGGATTCTTTCTTGACTCAATTGACGTATCTGGTGGGCGCACCTTGAGGAATATGTTTGGAGGTGTAGTTACGTTACAGGTAATGGTTCAAGATAGTTTAGCTCCACCTTCTGCGGATCCTCGTGGATCTTGGAGAGAATGCAAATTGAATCATGCACATTGTAATTCATCTCAGATACAATTCCTTCAAGATTTTAGGAATGAGATGCTGAATGCAGTAAAAGATTTCTCAATATCCAATCAAAATGGTTTGTTCATAAATTCTTGTTTTGCTCATTGCCAGTCTGAGAGGCAAGATACATGGTTTGCAGATGATTCTCCTGTTATTGGAAACAAGGCAATTGCAGTGTCTGTCGGAGACTGGTACTTCGATAGAGCAAGCGTCAAAGCCATTGATTGTGCATACCCATGTGATGAAACCTGCCATAATCTGGTCTTCAACTGA 1608 43.72 MDRWKKVNIDWKVFHLRKRENGRKVVIEERRGSRMSRLDVDVGTFAWVRDCLMAITKSENLNGFWRRRKLETMIIFFQVLSNKKGRFGLLSLESDRGRKSFIFIPEGPNRRGWGPLEAAMTNLLPPPKASNRIEKGLVKEKDSDSGDGLIEEGARNSKSFVEIVRKNSKKGNEAIKKSPIARELAFDCSSAVIIERVNIDIQWMCIKEECLRLAKIWFILKPICVNLAVGLCESEKEAKDLFVVDLFVSSWVLFPDLFVLPWVSRSVPKGEIRVSVQTAALIRTGIEPQCITIQKVKDYTINLSIRGKSLKPFGQERWVFEAKAAQLNFRGQQIWLTAMEELMSKGMQNASQALLSGCSAGGLASILHCDEFHELFPKTTKVKCLSDAGFFLDSIDVSGGRTLRNMFGGVVTLQVMVQDSLAPPSADPRGSWRECKLNHAHCNSSQIQFLQDFRNEMLNAVKDFSISNQNGLFINSCFAHCQSERQDTWFADDSPVIGNKAIAVSVGDWYFDRASVKAIDCAYPCDETCHNLVFN 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 131318 137834 + Maker00025946 Lcy7g0008 636840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0008 535 Pfam Pectinacetylesterase 416 514 IPR004963 GO:0016787(InterPro)
Lcy7g0008 535 Pfam Pectinacetylesterase 322 415 IPR004963 GO:0016787(InterPro)
Lcy7g0008 535 PANTHER NOTUM-RELATED 417 532 IPR004963 GO:0009505(PANTHER)|GO:0016787(InterPro)|GO:0052793(PANTHER)|GO:0071555(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1985 Lcy-Chr2:37025680 Lcy7g0008 Lcy-Chr7:131318 2.90E-88 dispersed
Lcy6g0754 Lcy-Chr6:7417325 Lcy7g0008 Lcy-Chr7:131318 7.05E-67 dispersed
Lcy7g0008 Lcy-Chr7:131318 Lcy8g0190 Lcy-Chr8:4599078 2.19E-86 dispersed
Lcy7g0008 Lcy-Chr7:131318 Lcy13g1399 Lcy-Chr13:32286524 1.15E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0008 K19882 - cit:102609454 344.739