Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0020 ATGGAGACTCACTTTAATCACAATCTATTCGACAGGCGACCCATTGTGAAGAACAAGACTCCTGCCGTCAAATGGATCAAAGAATGGGTCCCCCAAGATGTTGTTGCAACTGGAGGAAAGTGCTTTCTGATGAAATGGGTTACAGAGGATGCATTGAAGGCATTAAAGGAGAAGGCAAAACAGTCAGAGGCACCAGAACCTGAACCAGAACCCACAACTGAAGTGCTTTTCCTTTGTAGCTACGAGGGCTGTGGAAAAACATTTATTGATGCAGGTGCTTTGAGGAAGCATTCTCACATTCATGGGGAGAGGCAATATGTTTGTCACTACGAGGGCTGTGGAAAGAAATTTTTGGATAGTTCGAAGTTGAAAAGACACTTTCTTATTCATACTGGTGAAAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGTGATTAATCGATCCATTGTGAAAAGATCTAGTCAAATTTTCTTTCTTGCTATATTGCATGCAGTTGCATTTTCCCTGGATTTCAACTTGAGATCGCATATGAAAACGCATTCACAAGAAAACTATCATATTTGTCCATACCCTGATTGTGGAAAGAGATTTGCCCACGAGTACAAATTGAAGAACCACATTACATCTCACCATGAAAAGAATGTGACAGCTGAAGTAGTCAAATATACACCACCTTCTGAGAAGCAAACTAAGGTTTCTAAACCTTCTGGAGGAGCTTATGCTTCTGCATCATCGGATCGCCCATATGCTTGCCCCTATGAAGGGTGTGAAAAGGCGTACATCCATGAATACAAGCTTAAACTCCATTTGAGAAGAGAGCATCCTGGACATCTGGTAGAAGACAATGGCAATGCTCCACATAATGGGGAAAATGAGATAGAAGCCAGTGATCATGATGGCTATAGCGGAAAACGGGTAAATATGAAAAACCAGAAACAGAACAAGCCTAAACCAAACTTGAAGTTACCGCCTTCAAAAATATCACAGCGAAAAGGCACAACTCCATCTCCTGCCCCAATGAGTGCAGTTAAAAAATCATGGCCGGTTAAAGAAGAAGCCTACGAGGAAGAAGATAGTGAAGAAACGGAGGAGGACCGTGAGAATGTGGAGGAGGGTTGGAGATATGCTGAAAACGAAGATGATGATGAGGAAACAGAGTATGAAGATTAA 1176 42.01 METHFNHNLFDRRPIVKNKTPAVKWIKEWVPQDVVATGGKCFLMKWVTEDALKALKEKAKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKVINRSIVKRSSQIFFLAILHAVAFSLDFNLRSHMKTHSQENYHICPYPDCGKRFAHEYKLKNHITSHHEKNVTAEVVKYTPPSEKQTKVSKPSGGAYASASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHLVEDNGNAPHNGENEIEASDHDGYSGKRVNMKNQKQNKPKPNLKLPPSKISQRKGTTPSPAPMSAVKKSWPVKEEAYEEEDSEETEEDRENVEEGWRYAENEDDDEETEYED 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 210376 214914 + Maker00026039 Lcy7g0020 636852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0020 391 ProSitePatterns Zinc finger C2H2 type domain signature. 253 276 IPR013087 -
Lcy7g0020 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Lcy7g0020 391 MobiDBLite consensus disorder prediction 293 307 - -
Lcy7g0020 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Lcy7g0020 391 SUPERFAMILY beta-beta-alpha zinc fingers 168 215 IPR036236 -
Lcy7g0020 391 Gene3D Classic Zinc Finger 77 102 - -
Lcy7g0020 391 MobiDBLite consensus disorder prediction 328 342 - -
Lcy7g0020 391 FunFam zinc finger transcription factor YY1 77 102 - -
Lcy7g0020 391 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Lcy7g0020 391 Gene3D Classic Zinc Finger 187 213 - -
Lcy7g0020 391 FunFam Zinc finger transcription factor YY1 226 293 - -
Lcy7g0020 391 MobiDBLite consensus disorder prediction 279 391 - -
Lcy7g0020 391 SMART c2h2final6 136 182 IPR013087 -
Lcy7g0020 391 SMART c2h2final6 77 101 IPR013087 -
Lcy7g0020 391 SMART c2h2final6 251 276 IPR013087 -
Lcy7g0020 391 SMART c2h2final6 106 130 IPR013087 -
Lcy7g0020 391 SMART c2h2final6 188 212 IPR013087 -
Lcy7g0020 391 SUPERFAMILY beta-beta-alpha zinc fingers 101 143 IPR036236 -
Lcy7g0020 391 Gene3D Classic Zinc Finger 133 186 - -
Lcy7g0020 391 FunFam zinc finger transcription factor YY1 185 216 - -
Lcy7g0020 391 MobiDBLite consensus disorder prediction 228 242 - -
Lcy7g0020 391 FunFam Putative zinc finger protein 143 103 133 - -
Lcy7g0020 391 Gene3D Classic Zinc Finger 225 290 - -
Lcy7g0020 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 188 217 IPR013087 -
Lcy7g0020 391 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 150 - GO:0000790(PANTHER)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005667(PANTHER)|GO:0006357(PANTHER)|GO:0031519(PANTHER)
Lcy7g0020 391 SUPERFAMILY beta-beta-alpha zinc fingers 78 102 IPR036236 -
Lcy7g0020 391 MobiDBLite consensus disorder prediction 355 369 - -
Lcy7g0020 391 MobiDBLite consensus disorder prediction 224 249 - -
Lcy7g0020 391 Gene3D Classic Zinc Finger 103 132 - -
Lcy7g0020 391 SUPERFAMILY beta-beta-alpha zinc fingers 246 274 IPR036236 -
Lcy7g0020 391 ProSitePatterns Zinc finger C2H2 type domain signature. 190 213 IPR013087 -
Lcy7g0020 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 278 IPR013087 -
Lcy7g0020 391 Pfam Zinc finger, C2H2 type 188 212 IPR013087 -
Lcy7g0020 391 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Lcy7g0020 391 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Lcy7g0020 391 MobiDBLite consensus disorder prediction 376 391 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20356 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0020 - - - 0.0