Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0035 ATGCCTGCAGCAAACAACTCCGACATGGCTACTTGCATTCGAGATTCGGTAGAAGATGAAGAACACATTTTCCGCAGCCAACTTCCTGAGGTCCAAGTGCCTGATGATATCACATTGCCGGAGTTTGTACTTCAGAATGCTGAATCATATGCTGAAAATGTGGCATTTGTGGAAGCCGTAAGCGGAAAGGCGTATACTTACCGTGAAGTTGTGAGAGACACGAATAGATTCGCTAAGGCCTTGAGCTCTCTGAGGTTGAGGAAGGGGCAGGTGGTTCTTGTTGTTCTACCCAACGTTGCAGAATATGCCATTGTTGCTTTAGGGATAATGGCTGCTGGAGGTGTGTTTTCTGGTGTGAATCCAGCAGCTCACATATCAGAAATCAAAAAGCAGGTGGAGGTAGCAGACGCCAAACTCGTCGTCACAAACAGTGCAAACTTTGAAAAGGTAAAGGAATTAAAGCTACCAGTGATCGTATTGGGGGAGGAACTGATTGAAGATTCGATGAACTGGCATAAACTGCTCGAAGCTGCGGACCGTGCAGGCAACAATTTTGTTAAAGAAGATATCAAGCAGACTGATTTATGTGCCCTTCCTTTCTCATCAGGCACCACAGGAGTTTCCAAAGGTGTAATGCTAACTCATCGAAATCTAGTGGCTAACTTGTGTTCTACGCTCTCTGGTGTGCCGCAAGAAATGGAGGGCAAGGTCACGACGTTGGGCCTCATTCCATTCTTCCATATTTATGGGATTACTGGAATATGTTGTGCCACACTTAGAAATAAGGGAAAAGTTGTGGTGATGGGAAGATTTGATCTCAGGACCTTTATTAATGCCCTGATAACACAGGAGGTCACATTTGCTCCAATTGTTCCTCCTATCATCTTGGCTTTGGTTAAGAACCCTATTGTGGAGGAATTTGATCTTAGCGGTCTCAAACTTCAAGCTATCATGACTGCAGCTGCTCCGCTCGCACCGGAACTTCAAACTGCCTTTGAGAAAAAGTTCCCAGGTGTGGATGTTCAAGAGGCATATGGACTAACTGAGCACAGCTGCATCACTCTCAACTATGGAAGTATAGGCAAAGAGAATCTCACTGCAAGGAAGAACACAGTTGGCCGTATTCTTCCTAATCTAGAAGTCAAATTCATCGACCCTGGCAGCGGCAGATCTCTGCCAAAGAATACTCCAGGTGAAGTCTGTGTAAGAAGCCAGTGTGTGATGCAAGGCTACTACAAAAATGAAGAGGAGACTTCAAGGACCATCGACAACAAAGGCTGGATGCACACGGGCGACATTGGATACATTGATGACGATGGCGATGTGTTTATTGTGGATCGTATTAAAGAGTTGATTAAGTACAAAGGCTTTCAAGTTGCTCCAGCTGAGTTAGAGGCAATCCTCCTTACACATCCCTCCATTGAAGATGCAGCTGTGGTGCCGCTGCCAGACGAAGAAGCCGGTGAGATCCCAGCAGCAAGCGTCGTGATTGCTCCAAATTCAAAAGAAACTGAAGATGAAATAATCAAATACGTTGCCTCAAATGTTGCACATTACAAGAAAGTTAGGCTCGTTCATTTTGTGGACACTATCCCGAAATCGCCTTCTGGGAAAGTAATGAGAAGGTTGATCAAAGAGAAGATGATCGAAAAGATTCGAGCCGAGTCCAGCTCTTGA 1677 45.26 MPAANNSDMATCIRDSVEDEEHIFRSQLPEVQVPDDITLPEFVLQNAESYAENVAFVEAVSGKAYTYREVVRDTNRFAKALSSLRLRKGQVVLVVLPNVAEYAIVALGIMAAGGVFSGVNPAAHISEIKKQVEVADAKLVVTNSANFEKVKELKLPVIVLGEELIEDSMNWHKLLEAADRAGNNFVKEDIKQTDLCALPFSSGTTGVSKGVMLTHRNLVANLCSTLSGVPQEMEGKVTTLGLIPFFHIYGITGICCATLRNKGKVVVMGRFDLRTFINALITQEVTFAPIVPPIILALVKNPIVEEFDLSGLKLQAIMTAAAPLAPELQTAFEKKFPGVDVQEAYGLTEHSCITLNYGSIGKENLTARKNTVGRILPNLEVKFIDPGSGRSLPKNTPGEVCVRSQCVMQGYYKNEEETSRTIDNKGWMHTGDIGYIDDDGDVFIVDRIKELIKYKGFQVAPAELEAILLTHPSIEDAAVVPLPDEEAGEIPAASVVIAPNSKETEDEIIKYVASNVAHYKKVRLVHFVDTIPKSPSGKVMRRLIKEKMIEKIRAESSS 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 292427 295658 + Maker00025855 Lcy7g0035 636867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0035 558 FunFam Long-chain-fatty-acid--CoA ligase FadD 25 449 - -
Lcy7g0035 558 SUPERFAMILY Acetyl-CoA synthetase-like 21 551 - -
Lcy7g0035 558 FunFam 4-coumarate--CoA ligase 2 450 551 - -
Lcy7g0035 558 Pfam AMP-binding enzyme 45 412 IPR000873 -
Lcy7g0035 558 ProSitePatterns Putative AMP-binding domain signature. 198 209 IPR020845 -
Lcy7g0035 558 Pfam AMP-binding enzyme C-terminal domain 463 538 IPR025110 -
Lcy7g0035 558 CDD 4CL 33 542 - -
Lcy7g0035 558 Gene3D - 21 449 IPR042099 -
Lcy7g0035 558 Gene3D - 450 552 IPR045851 -
Lcy7g0035 558 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 544 - GO:0004467(PANTHER)|GO:0016405(PANTHER)|GO:0046949(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0839 Lcy-Chr5:13457090 Lcy7g0035 Lcy-Chr7:292427 1.46E-125 dispersed
Lcy7g0035 Lcy-Chr7:292427 Lcy8g0946 Lcy-Chr8:33605182 1.30E-126 dispersed
Lcy7g0035 Lcy-Chr7:292427 Lcy12g0501 Lcy-Chr12:6031207 1.06E-136 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0035 K01904 - csv:101220731 995.727