Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy7g0050 | ATGGCCACTGCTCTTCTCAAGTATATACTGGAAGCCAACGCCTATCCAAGAGAGCATGAACAGTTGAAGGAACTCAGAGAAACCACCTTGGAGAAGTTCGACAAGTTCGAGAGCGTGATGAATGTACCGGCGAATCAAGGATTGTTTCTATCGATGCTTTTGAAACTGATGAACGCAAAGAAAACTATAGAGATGGGCGTATTCACTGGCTATTCGCTCCTCACCACTGCGCTTGCACTGCCCGCTGAGGGCCAGATAACAGCCATTGATGTGAATAGAGAATCATTCGAAATTGGTTTGCCATTTATCAAGAAGGCAGGAGTTGATCATAAAATCAATTTTGTGGAATCTCAAGCATTGGTTGTCCTGGATGACCTCCTCAATGATATCTAG | 393 | 44.27 | MATALLKYILEANAYPREHEQLKELRETTLEKFDKFESVMNVPANQGLFLSMLLKLMNAKKTIEMGVFTGYSLLTTALALPAEGQITAIDVNRESFEIGLPFIKKAGVDHKINFVESQALVVLDDLLNDI | 130 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 387716 | 389419 | - | Maker00026139 | Lcy7g0050 | 636882 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy7g0050 | 130 | Gene3D | Vaccinia Virus protein VP39 | 1 | 130 | IPR029063 | - | |
| Lcy7g0050 | 130 | PANTHER | O-METHYLTRANSFERASE-RELATED | 3 | 129 | IPR050362 | GO:0008757(PANTHER) | |
| Lcy7g0050 | 130 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 1 | 130 | IPR002935 | GO:0008171(InterPro) | |
| Lcy7g0050 | 130 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 7 | 128 | IPR029063 | - | |
| Lcy7g0050 | 130 | Pfam | O-methyltransferase | 14 | 129 | IPR002935 | GO:0008171(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy7g0050 | Lcy-Chr7:387716 | Lcy9g1066 | Lcy-Chr9:34474792 | 1.00E-72 | dispersed | |
| Lcy7g0050 | Lcy-Chr7:387716 | Lcy7g0051 | Lcy-Chr7:404817 | 7.64E-11 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy7g0050 | K00588 | - | csv:101212121 | 196.438 |