Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0059 ATGGAAGGCCAGTTGGCCGCAAACGGGTTTGTGGGTTTATTTCCGCTTGGAATCTTAGCTCAGGGTGTCATTTTCCTTGACGAACATAAAATCATGGATGTTCCCGAGGTTGAAGAAATACTTTTTGCTCCCGCTGATGCCAAGTTGCATGGAGATATGTACAAGAAACTCGCTGGAATTTATTGCCAAGTTATGTCAATTTTCCCTTCCCTGGAAGCAGCACGACCTAGGAGCAAAACTGGTATTCAGGCTTTATGTTCATTGCATGTAGCTCTTGAGAAGGCCAAGAATACTCTTCGGCATTGCTCAGAATCCAGTAAACTCTACTTGGCTATAACTGGAGATGCTGTTCTAGCCAAATTTGAAAAGGCAAGATGTTCACTTGAAGTTAGTCTTATATGCGTTGAAGATATTGTTTCACAATCAATTGGATTTCAGATTCAGCAGATAGTGAACGAACTCAAGGACACTGTTTTCTTACTTGACCCACTTGAAAAACAAATTGGTGATGATATCATTGCATTACTCTTGCAAGAAAGAAAATTTGATGATTCCAATGGGCATAATGAGCTGGAGCATTTTCATCAGGCTGCCACGAAACTTGGAATTACCTCCTCCAAAGCAGCCCTCACGGAAAGAAGAGCTCTTAAGAGACTTGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATTGTAGCTTACCTTTTGCATCTCATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGGTGTCAGATGACACTGACTCACAGGGTGGGTCAACTCCTTGTTCTCCTACTGTTCGGTGTTCTCTTGAGGACAATGGACTTACAGCCAACGGTCAAGTTTTTGAACAGCAGCTTTCAAAGCTTAGTTCTTTCAATTTTAAGCCAAACTGTACGATATCAGGGCAGATGCCTCTTCCACCTGAGGAATTGAGGTGTCCAATATCATTGCAGCTTATGTATGACCCTGTCATAATTGATTCTGGGCAAACATTTGAAAGGATTTGCATAGAGAAGTGGTTCAGTGATGGTCATAAAACCTGCCCGAAAACTCAACAGAGGCTCTCGCATCTGTCCTTGACACCTAATTACTCTGTCAAGGGTCTCATTGCTAACTGGTGTGAACATAACGGAGTTCCTATCCCTGATGGCCCACCAAAGTCACTTGATCTGAATTATTGGAGGCTTGCATTGTCTGATTCTGAGTCTGGAAAATCAAGATCTGTGGACCATGTTGGCTCTCGCATGTTGAAGGAAGTTAAGGTAGTTCCTTTGGAGGAAAGTGAAACAATTAAGGTTGCTGAAGAAAATGAAGCAGATGATAATACATATATGGAGGAACCATCTGATTTTATTACACTAGAGAGTTGTGTGAATTTTATGACAGTATTGAATGAAGAGGGAGACTTGAGAAAAAAATGTAAGGTTGTGGAGCAGATAAGACTTTTACTGAAGGATGATGATGATGCCCGAATTTTGATGGGAGCCAATGGCTTTGCTGAAGCACTTATGGAATTTCTAACTTTAGCTCTTATTGAAGAAAACGCTGATGCTCAGGAAAGTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGGTCTGTACTGTTTATCTAA 1635 41.35 MEGQLAANGFVGLFPLGILAQGVIFLDEHKIMDVPEVEEILFAPADAKLHGDMYKKLAGIYCQVMSIFPSLEAARPRSKTGIQALCSLHVALEKAKNTLRHCSESSKLYLAITGDAVLAKFEKARCSLEVSLICVEDIVSQSIGFQIQQIVNELKDTVFLLDPLEKQIGDDIIALLLQERKFDDSNGHNELEHFHQAATKLGITSSKAALTERRALKRLVERARLEEDKRKESIVAYLLHLMRKYSKLFRSEVSDDTDSQGGSTPCSPTVRCSLEDNGLTANGQVFEQQLSKLSSFNFKPNCTISGQMPLPPEELRCPISLQLMYDPVIIDSGQTFERICIEKWFSDGHKTCPKTQQRLSHLSLTPNYSVKGLIANWCEHNGVPIPDGPPKSLDLNYWRLALSDSESGKSRSVDHVGSRMLKEVKVVPLEESETIKVAEENEADDNTYMEEPSDFITLESCVNFMTVLNEEGDLRKKCKVVEQIRLLLKDDDDARILMGANGFAEALMEFLTLALIEENADAQESGAMALFNLSVNNNRSVLFI 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 472227 478049 + Maker00026002 Lcy7g0059 636891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0059 544 Pfam U-box domain 312 381 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy7g0059 544 PANTHER U BOX DOMAIN-CONTAINING 53 541 - -
Lcy7g0059 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 384 IPR013083 -
Lcy7g0059 544 SMART Ubox_2 314 377 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy7g0059 544 SUPERFAMILY RING/U-box 309 387 - -
Lcy7g0059 544 ProSiteProfiles U-box domain profile. 310 384 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy7g0059 544 FunFam RING-type E3 ubiquitin transferase 310 384 - -
Lcy7g0059 544 CDD RING-Ubox_PUB 312 364 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2248 Lcy-Chr5:45425010 Lcy7g0059 Lcy-Chr7:472227 1.58E-11 dispersed
Lcy6g0908 Lcy-Chr6:9232811 Lcy7g0059 Lcy-Chr7:472227 6.14E-57 dispersed
Lcy7g0059 Lcy-Chr7:472227 Lcy8g1815 Lcy-Chr8:44541024 2.22E-32 dispersed
Lcy13g1697 Lcy-Chr13:35947310 Lcy7g0059 Lcy-Chr7:472227 4.29E-235 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0059 - - - 0.0