Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0109 ATGGCTCTCCTTCATCTCTCTCCATGGCTTCCCCTCATCATCTTTTCCACTCTACTTCTCTTCATCCTAAAAATGAAGAAAACTGCAAATAGAGAAAAGGGTCGTCGTATTCCCCCAAGCCCACCAAAGCTTCCAATTATAGGAAACTTGCACCAAATTGGGAAGCTCCCTCACAGATCTCTATGGCGTCTCTCTCAGCTCTACGGCCCCATCATCAGCCTCAGCCTCGGCGGCATCCAAACCATCGTCATATCCTCAGCCGACGCCGCCCGCGCCCTCTTGAAAACCCACGATCTTCAAAGCTGCAGCAGACCACAGACTGAAAATGTCAAGAAACTCACTCACAACTTCATCGACGTTGTATTTTCGCCTTATGGTGATTACTGGCGAGAGATGCGCAAGATTTGTGTGCTCGAGCTTTTCAGCGTGAAGAGGGTGAAATCTTATGAACCCATTAGAGAACAGGAAGTTGCTTCGCTTGTCCAATCAATTTCGGAATTGGCTTCGACAGGAAGTGCTGTTGATCTTAGTGAGAAGTCCATCGCTCTCACTACTGGTATTATTTTCAGAATTGCTTTTGGGAAGAAGTTTGAAGGGTATGGATTTCATGAGCTTGTGAGTGAGGCTGAGGTCTTGTTGGGAAGCTACAGTGCTTCTGAGCTTTTTCCTGTTCCATTTGTGGGGAAGGTCATTGATTGGCTGAGTGGAAGAAAAACTAGACTTGAGAAGGTTTTTAATGAGTTGAATGCTTTGTTTCAAGAAGTGATTGATGAACATCTTTGCACAGAGAGAGCTAAGCCAGAGCAAGATGATATTATTGATGTGCTTTTGGCAATCAACAAAAAGAGAGTTGAGCCTTGTGCTGTTGCCATTACTCATGAAAATATCAAAGCCATTCTTTTGAACATATTTTTGGCTGGATTAGACACTAGTTCCATTACACTAGTATGGGCAATGGCAGAGCTTGCTAAGAAACCAAAATTGATGAAGAAAGTGCAAGAAGAAATCAGAAATTGCATAGGAAACAGAGGAAAGGTAACAGAGAATGACACAGAAGAGCTTCCATATTTGAAAATGATAGTGAAAGAGACGTTGAGACTGCATCCACCAGCACCCCTTCTTGTTCCAAGAGAAATCATGTCCCATTTCAAAATTGAAGGCTACGATTTTTACCCCAAAACAATAGTTCAAGTGCACGCTTGGGCAATTGGACGAGACCCCAAATGTTGGATAGACCCCGAAGAGTTTATTCCGGAGCGATTTGCAGAGAGCTTTGTTGATTACAAAGGACAACATTTTGAGTTCTTGCCATTTGGGGCTGGTCGGAGGATTTGCCCCGGGTTGAATATGGGGGTGAAGACTGTGGAGTTTGCTTTGGCAAATCTTTTGTATCATTTTGATTGGAAGTTGCCAAAGGGGATGAAGGAGGAAGATTTGGACATGGAAGAAACGTCAGGTTTTAGCCTCACCATCTACAAGAAGTTGCCTCTCATACTTGTGCCAATCTCACACCATCCTTGA 1521 43.85 MALLHLSPWLPLIIFSTLLLFILKMKKTANREKGRRIPPSPPKLPIIGNLHQIGKLPHRSLWRLSQLYGPIISLSLGGIQTIVISSADAARALLKTHDLQSCSRPQTENVKKLTHNFIDVVFSPYGDYWREMRKICVLELFSVKRVKSYEPIREQEVASLVQSISELASTGSAVDLSEKSIALTTGIIFRIAFGKKFEGYGFHELVSEAEVLLGSYSASELFPVPFVGKVIDWLSGRKTRLEKVFNELNALFQEVIDEHLCTERAKPEQDDIIDVLLAINKKRVEPCAVAITHENIKAILLNIFLAGLDTSSITLVWAMAELAKKPKLMKKVQEEIRNCIGNRGKVTENDTEELPYLKMIVKETLRLHPPAPLLVPREIMSHFKIEGYDFYPKTIVQVHAWAIGRDPKCWIDPEEFIPERFAESFVDYKGQHFEFLPFGAGRRICPGLNMGVKTVEFALANLLYHFDWKLPKGMKEEDLDMEETSGFSLTIYKKLPLILVPISHHP 506
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 1004262 1006241 - Maker00026099 Lcy7g0109 636941
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0109 506 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 438 447 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy7g0109 506 SUPERFAMILY Cytochrome P450 38 501 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy7g0109 506 FunFam Cytochrome P450 83B1 23 500 - -
Lcy7g0109 506 Gene3D Cytochrome P450 22 495 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy7g0109 506 PANTHER CYTOCHROME P450 71B11-RELATED 15 502 IPR050193 -
Lcy7g0109 506 CDD CYP71-like 68 497 - -
Lcy7g0109 506 Pfam Cytochrome P450 38 490 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy7g0109 506 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy7g0109 506 PRINTS P450 superfamily signature 436 445 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy7g0109 506 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy7g0109 506 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy7g0109 506 PRINTS E-class P450 group I signature 435 445 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy7g0109 506 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy7g0109 506 PRINTS E-class P450 group I signature 183 201 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy7g0109 506 PRINTS E-class P450 group I signature 445 468 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy7g0109 506 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy7g0109 506 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy7g0109 506 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0109 Lcy-Chr7:1004262 Lcy7g0112 Lcy-Chr7:1014749 0 dispersed
Lcy7g0109 Lcy-Chr7:1004262 Lcy7g0110 Lcy-Chr7:1008013 3.70e-315 tandem
Lcy7g0109 Lcy-Chr7:1004262 Lcy9g2181 Lcy-Chr9:46468297 1.29E-17 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0109 - - - 0.0