Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy7g0162 | ATGTACGGCTTGCAATCCACCGCCGAATATTCGGATAAGGCCTTGATGTCGCCGGAGAATCTGATTCTGCCGTCCGATTATCAGAGCCTTCTGGTCACATCCGGAGAGTATCGCGATCGGATTCCGGTGTTTGGATCCAACGAATTGCTCTCGGCGGCGGCGTCCGCGATATCGGAGGCCGAAGCGGCATCGATCGCGCCGGAAATTCAACGTGAAGAAGATGTGGTGAACGTGATCAAAGCCAAGATTTCGTCTCATCCTATTTATCCTCGTTTGCTCGACGCCTATATTGACTGCCAAAAGGTAGGGGCGCCTCCGGAGATTGCACATTTGTTAGAGGGAATCCGTCAAGAAAGCGACCTTTGTAACCGTCACGCTGTCACCACGTGCTTAGGCGTCGATCCTGAGCTCGATGAATTCATGGAAACGTACTGCGATATGCTGGTGAAGTATAAATCAGATCTCAAAAGGCCTTTCGATGAAGCAACCACGTTCTTGAATAAGATCGAAATGCAACTTAGTAACCTCTGCAATGGCGCCTTCTCCAGAAGCCTTTCTGTTTTCGCTGCGAAGGTGCTTTTGGTGCCCTCTCTTACCCACGCACTGAGTCACTCCCAGCTGGTTAGTGGTTGTCACTTCTATCGACAAGTACTCTGCCGTGTTCTTCGTGCGGATGATGTGTACGACACGTGTCTCTTTCTCGCTGGAACTGCAGCGGGTCGTGTGGTGGGGGCATTGCTTACTGCTCATGGGATATCGCCGAGAGAGGGAGGAGTTGGTAGTCAAATCCTTGTTTTACCTTTGAATGCCTTTCTTTGTGGGGTCCTCTCCAATTCTGTCCTGCCCTTTCAATACGAAGGTGCTGTCTCGTCGGACGAAGAGTTGAGCGGAGGAGAAATGGAAGTTGTGGAGGCGGAGGCTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTTTACGTAGATTTGGCAGTCATATTAGTACCTTAAAATTGGAGTTCTCGAAGAAGAAGAAAAAAGGAAAACTACCAAAAGAAGCCAGGCAAACACTCCTTGAATGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCCGATAAAGTTGCACTGGCAGAGAGAACAGGGCTTGACCAGAAGCAAATTAACAATTGGTTCATAAATCAGCGTAAACGCCACTGGAAGCCATCAGAGAATATGCAGTTTGAAGGAATGGATGGGCTTTCTTCTGGTAGATTCTTCAGAGAGGACTGA | 1260 | 48.89 | MYGLQSTAEYSDKALMSPENLILPSDYQSLLVTSGEYRDRIPVFGSNELLSAAASAISEAEAASIAPEIQREEDVVNVIKAKISSHPIYPRLLDAYIDCQKVGAPPEIAHLLEGIRQESDLCNRHAVTTCLGVDPELDEFMETYCDMLVKYKSDLKRPFDEATTFLNKIEMQLSNLCNGAFSRSLSVFAAKVLLVPSLTHALSHSQLVSGCHFYRQVLCRVLRADDVYDTCLFLAGTAAGRVVGALLTAHGISPREGGVGSQILVLPLNAFLCGVLSNSVLPFQYEGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSKKKKKGKLPKEARQTLLEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENMQFEGMDGLSSGRFFRED | 419 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1454864 | 1461380 | - | Maker00025996 | Lcy7g0162 | 636994 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy7g0162 | 419 | ProSitePatterns | 'Homeobox' domain signature. | 373 | 396 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Lcy7g0162 | 419 | Gene3D | - | 334 | 408 | - | - | |
Lcy7g0162 | 419 | ProSiteProfiles | ELK domain profile. | 315 | 335 | IPR005539 | GO:0003677(InterPro) | |
Lcy7g0162 | 419 | FunFam | Homeobox protein knotted-1-like 2 | 340 | 402 | - | - | |
Lcy7g0162 | 419 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 131 | 407 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lcy7g0162 | 419 | Pfam | KNOX1 domain | 79 | 120 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy7g0162 | 419 | Pfam | ELK domain | 315 | 336 | IPR005539 | GO:0003677(InterPro) | |
Lcy7g0162 | 419 | SUPERFAMILY | Homeodomain-like | 336 | 411 | IPR009057 | - | |
Lcy7g0162 | 419 | ProSiteProfiles | 'Homeobox' domain profile. | 335 | 398 | IPR001356 | GO:0003677(InterPro) | |
Lcy7g0162 | 419 | SMART | ELK_2 | 315 | 336 | IPR005539 | GO:0003677(InterPro) | |
Lcy7g0162 | 419 | SMART | KNOX1_2 | 77 | 121 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy7g0162 | 419 | SMART | HOX_1 | 337 | 402 | IPR001356 | GO:0003677(InterPro) | |
Lcy7g0162 | 419 | Pfam | KNOX2 domain | 131 | 177 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy7g0162 | 419 | Pfam | Homeobox KN domain | 355 | 394 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lcy7g0162 | 419 | SMART | KNOX2_2 | 127 | 178 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy7g0162 | 419 | CDD | homeodomain | 347 | 399 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0468 | Lcy-Chr1:4080190 | Lcy7g0162 | Lcy-Chr7:1454864 | 6.22E-25 | dispersed | |
Lcy7g0162 | Lcy-Chr7:1454864 | Lcy9g1996 | Lcy-Chr9:44828107 | 6.99E-77 | dispersed | |
Lcy13g1266 | Lcy-Chr13:29807125 | Lcy7g0162 | Lcy-Chr7:1454864 | 8.60E-60 | transposed | |
Lcy13g1263 | Lcy-Chr13:29778043 | Lcy7g0162 | Lcy-Chr7:1454864 | 2.02E-85 | wgd | |
Lcy2g0672 | Lcy-Chr2:5747501 | Lcy7g0162 | Lcy-Chr7:1454864 | 7.71E-102 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20359 | None | None | None | None | Lcy | TF |
Pathway information
