Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0162 ATGTACGGCTTGCAATCCACCGCCGAATATTCGGATAAGGCCTTGATGTCGCCGGAGAATCTGATTCTGCCGTCCGATTATCAGAGCCTTCTGGTCACATCCGGAGAGTATCGCGATCGGATTCCGGTGTTTGGATCCAACGAATTGCTCTCGGCGGCGGCGTCCGCGATATCGGAGGCCGAAGCGGCATCGATCGCGCCGGAAATTCAACGTGAAGAAGATGTGGTGAACGTGATCAAAGCCAAGATTTCGTCTCATCCTATTTATCCTCGTTTGCTCGACGCCTATATTGACTGCCAAAAGGTAGGGGCGCCTCCGGAGATTGCACATTTGTTAGAGGGAATCCGTCAAGAAAGCGACCTTTGTAACCGTCACGCTGTCACCACGTGCTTAGGCGTCGATCCTGAGCTCGATGAATTCATGGAAACGTACTGCGATATGCTGGTGAAGTATAAATCAGATCTCAAAAGGCCTTTCGATGAAGCAACCACGTTCTTGAATAAGATCGAAATGCAACTTAGTAACCTCTGCAATGGCGCCTTCTCCAGAAGCCTTTCTGTTTTCGCTGCGAAGGTGCTTTTGGTGCCCTCTCTTACCCACGCACTGAGTCACTCCCAGCTGGTTAGTGGTTGTCACTTCTATCGACAAGTACTCTGCCGTGTTCTTCGTGCGGATGATGTGTACGACACGTGTCTCTTTCTCGCTGGAACTGCAGCGGGTCGTGTGGTGGGGGCATTGCTTACTGCTCATGGGATATCGCCGAGAGAGGGAGGAGTTGGTAGTCAAATCCTTGTTTTACCTTTGAATGCCTTTCTTTGTGGGGTCCTCTCCAATTCTGTCCTGCCCTTTCAATACGAAGGTGCTGTCTCGTCGGACGAAGAGTTGAGCGGAGGAGAAATGGAAGTTGTGGAGGCGGAGGCTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTTTACGTAGATTTGGCAGTCATATTAGTACCTTAAAATTGGAGTTCTCGAAGAAGAAGAAAAAAGGAAAACTACCAAAAGAAGCCAGGCAAACACTCCTTGAATGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCCGATAAAGTTGCACTGGCAGAGAGAACAGGGCTTGACCAGAAGCAAATTAACAATTGGTTCATAAATCAGCGTAAACGCCACTGGAAGCCATCAGAGAATATGCAGTTTGAAGGAATGGATGGGCTTTCTTCTGGTAGATTCTTCAGAGAGGACTGA 1260 48.89 MYGLQSTAEYSDKALMSPENLILPSDYQSLLVTSGEYRDRIPVFGSNELLSAAASAISEAEAASIAPEIQREEDVVNVIKAKISSHPIYPRLLDAYIDCQKVGAPPEIAHLLEGIRQESDLCNRHAVTTCLGVDPELDEFMETYCDMLVKYKSDLKRPFDEATTFLNKIEMQLSNLCNGAFSRSLSVFAAKVLLVPSLTHALSHSQLVSGCHFYRQVLCRVLRADDVYDTCLFLAGTAAGRVVGALLTAHGISPREGGVGSQILVLPLNAFLCGVLSNSVLPFQYEGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSKKKKKGKLPKEARQTLLEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENMQFEGMDGLSSGRFFRED 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1454864 1461380 - Maker00025996 Lcy7g0162 636994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0162 419 ProSitePatterns 'Homeobox' domain signature. 373 396 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy7g0162 419 Gene3D - 334 408 - -
Lcy7g0162 419 ProSiteProfiles ELK domain profile. 315 335 IPR005539 GO:0003677(InterPro)
Lcy7g0162 419 FunFam Homeobox protein knotted-1-like 2 340 402 - -
Lcy7g0162 419 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 131 407 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy7g0162 419 Pfam KNOX1 domain 79 120 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy7g0162 419 Pfam ELK domain 315 336 IPR005539 GO:0003677(InterPro)
Lcy7g0162 419 SUPERFAMILY Homeodomain-like 336 411 IPR009057 -
Lcy7g0162 419 ProSiteProfiles 'Homeobox' domain profile. 335 398 IPR001356 GO:0003677(InterPro)
Lcy7g0162 419 SMART ELK_2 315 336 IPR005539 GO:0003677(InterPro)
Lcy7g0162 419 SMART KNOX1_2 77 121 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy7g0162 419 SMART HOX_1 337 402 IPR001356 GO:0003677(InterPro)
Lcy7g0162 419 Pfam KNOX2 domain 131 177 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy7g0162 419 Pfam Homeobox KN domain 355 394 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy7g0162 419 SMART KNOX2_2 127 178 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy7g0162 419 CDD homeodomain 347 399 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0468 Lcy-Chr1:4080190 Lcy7g0162 Lcy-Chr7:1454864 6.22E-25 dispersed
Lcy7g0162 Lcy-Chr7:1454864 Lcy9g1996 Lcy-Chr9:44828107 6.99E-77 dispersed
Lcy13g1266 Lcy-Chr13:29807125 Lcy7g0162 Lcy-Chr7:1454864 8.60E-60 transposed
Lcy13g1263 Lcy-Chr13:29778043 Lcy7g0162 Lcy-Chr7:1454864 2.02E-85 wgd
Lcy2g0672 Lcy-Chr2:5747501 Lcy7g0162 Lcy-Chr7:1454864 7.71E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20359 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0162 - - - 0.0