Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0178 ATGAGGTCTTCTTCAAACGATACTTCTTCTCCTTCATCGGATTCTGATTCTGGTGCAGATTCAAGTTTGCCGCCTGAAGCTTCGGATTCTTCTCCTCCTCCTCCGTCGCAGCTGGATGATTTTTCAACCTTGTCATTTGATGAAGGCAATGAAGCCAATGAAGCCAATGGTCCTGAGCCGTCGGATCTTGTATCGCAATTTAATGCTCCGCCTACCGAGAGCGATGGTTCACCGTCTTCCTCACCGCCATCTAATCCAAACCCTGGATCTACACCGCCGGCTCCTATTGTCTCCTCCAATTCAAGTTCATCCGACGAGAATCCATCGCCCCCGCCTGAACCTTCCGCTTCACCACCGCCGTCTCCTCATCCTCCTCCGCCGCCGACTCGTCCACCACCGACTTCACCACCGCCTCCAGAACTGCCGTCTGAGTTTGAAGTCGATCCTCCACCTTCCCCTGTTCCGACCCAAAAAAACTATCCGGCAACTCCAGGAAGTCCGCCTTCTCCAATACCTGACAATAGTCCCTCTGTTCCGACGAATAACGGCAGTGCTCCGGGACCTGAGACCGACGAGGAGCTTCCACCATCTGAACCAACGGATCCTCTTTCTCCAACAGAAGCTCCAACCGTGGTTCCTTCACCAGGTGCAAGTCCGGGGACGGCGAGACGAACTCCGAGTCCACCTGAGGTATTAACCACTCCAACATCAGGGTCTAATGTTCTTCCACCTCCCACAACCACATCCTCCAGTCGTACTCCAAACAATTCACCTCATTCCACCGACTCAACGCCAGTGAAATCACCATCAGGGAAGTCCCACCCACCATCGTCAGGTTCAAGTAGTCACACTGATGCCATAATAGGCGCTGCAGTAGCTGGAGTTTTCGTAATCGTTTTGATTGCTGCGTTTTTTGTGTTTACAAGGAAGAAGAAAAGACGGACAGATTTGTACCCTGGCCCGTACTTGCCTCCCAATAACTTCGTTGTTAAATCAGATGGAAATTACTATCCGCATCAACATACGGGCAACTCTTCTGGTTCGGCAGAAGGCTTCTATACTCAGGTCCCGCATACTCCGGTTGGAAATAGCTTTGGGAGTCAAAGAGGAACGGGATACAGTGGCAGTGGCGGCGCCAGTGCAGCGGAGTCAGGTGTGATAAACAGTGCTAAATTCTTCTTTACCTATGAGGAATTGATGGAGGTTACGTCTGGATTTTCGCGTCAAAACATTCTTGGGGAAGGTGGGTTTGGATGTGTTTACCAGGGTTGGCTTCCAGAAGGGAAGACAGTGGCTGTCAAGCAACTCAAGGCAGGAAGTGGACAGGGCGAGAGGGAATTCAAGGCGGAAGTTGAGATTATCAGTCGTGTTCATCATCGGCATTTGGTGTCTTTGGTGGGCTACTGCGTCTCTGAGAATCATAGATTGCTCATCTATGAGTTTGTTCCTAACAAGACTCTTGAGTATCATCTCCATAGCGGTAATGAAGTGCCCGTGTTGGATTGGTGCAAAAGACTCAAAATCGCTTTAGGAGCTGCAAAGGGTTTGGCATATCTGCATGAAGATTGCCATCCCAGGATCATTCACAGAGATATCAAGTCAGCTAACATTTTGCTGGATGATGCTTTTGAGGCACAGGTTGCAGATTTTGGACTTGCAAAACTGACTAACGATACAAAAACCCACGTTTCGACTCGTGTCATGGGGACATTTGGATACATGGCACCTGAGTACGCATCAAGTGGGAAATTGACAGATAGATCAGATGTATTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATCACTGGTCGTAAGCCTGTTGATCCCACTCAGCCTTTGGGGGATGAGAGTTTGGTCGAATGGGCTCGTCCACTCCTTCTTCACGCCCTTGAAACTGGGGAGTTTGAAGTATTGATAGATCCACGCCTTGAAAAACGCTATGTGGAAAGTGAAATGTTCAGAATGATCGAAGCAGCAGCTGCCTGCGTTCGTCATTCGGCTCCCAAAAGGCCTCGCATGGTTCAGGTAGTGAGAGCACTAGACATTGAAGGCGACATTTCTGACCTCTCCAATGGTGTCAAATTTGGCCAGAGCACTATCTATGATTCTGGACAATACAGTCAAGACATTTCTAAGTTCAGGAGAATGGCATTCGGTGATAGCTCCGAGTACGACATTTACAGTAGCGAATACAATTCCAGAGACATGTCTGCAAGTCGTGAATCATGGAGATCAAATAACTCAAGTGGTGAATCAGAAACTCTAGCTTTTAAAGGACGAAGTGGTGTACAACAAAGTCACCGTACCAGTCGACAATTATAA 2322 48.71 MRSSSNDTSSPSSDSDSGADSSLPPEASDSSPPPPSQLDDFSTLSFDEGNEANEANGPEPSDLVSQFNAPPTESDGSPSSSPPSNPNPGSTPPAPIVSSNSSSSDENPSPPPEPSASPPPSPHPPPPPTRPPPTSPPPPELPSEFEVDPPPSPVPTQKNYPATPGSPPSPIPDNSPSVPTNNGSAPGPETDEELPPSEPTDPLSPTEAPTVVPSPGASPGTARRTPSPPEVLTTPTSGSNVLPPPTTTSSSRTPNNSPHSTDSTPVKSPSGKSHPPSSGSSSHTDAIIGAAVAGVFVIVLIAAFFVFTRKKKRRTDLYPGPYLPPNNFVVKSDGNYYPHQHTGNSSGSAEGFYTQVPHTPVGNSFGSQRGTGYSGSGGASAAESGVINSAKFFFTYEELMEVTSGFSRQNILGEGGFGCVYQGWLPEGKTVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVSENHRLLIYEFVPNKTLEYHLHSGNEVPVLDWCKRLKIALGAAKGLAYLHEDCHPRIIHRDIKSANILLDDAFEAQVADFGLAKLTNDTKTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPLLLHALETGEFEVLIDPRLEKRYVESEMFRMIEAAAACVRHSAPKRPRMVQVVRALDIEGDISDLSNGVKFGQSTIYDSGQYSQDISKFRRMAFGDSSEYDIYSSEYNSRDMSASRESWRSNNSSGESETLAFKGRSGVQQSHRTSRQL 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1578282 1582295 - Maker00026017 Lcy7g0178 637010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0178 773 Gene3D Transferase(Phosphotransferase) domain 1 482 690 - -
Lcy7g0178 773 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 244 716 IPR047117 -
Lcy7g0178 773 MobiDBLite consensus disorder prediction 737 773 - -
Lcy7g0178 773 SMART serkin_6 406 680 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g0178 773 CDD STKc_IRAK 412 681 - -
Lcy7g0178 773 MobiDBLite consensus disorder prediction 1 26 - -
Lcy7g0178 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy7g0178 773 FunFam proline-rich receptor-like protein kinase PERK8 482 695 - -
Lcy7g0178 773 ProSitePatterns Protein kinases ATP-binding region signature. 412 434 IPR017441 GO:0005524(InterPro)
Lcy7g0178 773 ProSiteProfiles Protein kinase domain profile. 406 682 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g0178 773 SUPERFAMILY Protein kinase-like (PK-like) 387 680 IPR011009 -
Lcy7g0178 773 MobiDBLite consensus disorder prediction 33 50 - -
Lcy7g0178 773 FunFam Proline-rich receptor-like protein kinase PERK8 379 481 - -
Lcy7g0178 773 MobiDBLite consensus disorder prediction 227 283 - -
Lcy7g0178 773 Pfam Protein tyrosine and serine/threonine kinase 409 679 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy7g0178 773 MobiDBLite consensus disorder prediction 59 80 - -
Lcy7g0178 773 Gene3D Phosphorylase Kinase; domain 1 376 481 - -
Lcy7g0178 773 MobiDBLite consensus disorder prediction 1 283 - -
Lcy7g0178 773 MobiDBLite consensus disorder prediction 107 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0213 Lcy-Chr6:1940605 Lcy7g0178 Lcy-Chr7:1578282 4.06E-80 dispersed
Lcy7g0178 Lcy-Chr7:1578282 Lcy7g0396 Lcy-Chr7:3370972 1.55E-156 dispersed
Lcy7g0178 Lcy-Chr7:1578282 Lcy10g2106 Lcy-Chr10:45109045 2.48E-160 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66062 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0178 - - - 0.0