Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy7g0178 | ATGAGGTCTTCTTCAAACGATACTTCTTCTCCTTCATCGGATTCTGATTCTGGTGCAGATTCAAGTTTGCCGCCTGAAGCTTCGGATTCTTCTCCTCCTCCTCCGTCGCAGCTGGATGATTTTTCAACCTTGTCATTTGATGAAGGCAATGAAGCCAATGAAGCCAATGGTCCTGAGCCGTCGGATCTTGTATCGCAATTTAATGCTCCGCCTACCGAGAGCGATGGTTCACCGTCTTCCTCACCGCCATCTAATCCAAACCCTGGATCTACACCGCCGGCTCCTATTGTCTCCTCCAATTCAAGTTCATCCGACGAGAATCCATCGCCCCCGCCTGAACCTTCCGCTTCACCACCGCCGTCTCCTCATCCTCCTCCGCCGCCGACTCGTCCACCACCGACTTCACCACCGCCTCCAGAACTGCCGTCTGAGTTTGAAGTCGATCCTCCACCTTCCCCTGTTCCGACCCAAAAAAACTATCCGGCAACTCCAGGAAGTCCGCCTTCTCCAATACCTGACAATAGTCCCTCTGTTCCGACGAATAACGGCAGTGCTCCGGGACCTGAGACCGACGAGGAGCTTCCACCATCTGAACCAACGGATCCTCTTTCTCCAACAGAAGCTCCAACCGTGGTTCCTTCACCAGGTGCAAGTCCGGGGACGGCGAGACGAACTCCGAGTCCACCTGAGGTATTAACCACTCCAACATCAGGGTCTAATGTTCTTCCACCTCCCACAACCACATCCTCCAGTCGTACTCCAAACAATTCACCTCATTCCACCGACTCAACGCCAGTGAAATCACCATCAGGGAAGTCCCACCCACCATCGTCAGGTTCAAGTAGTCACACTGATGCCATAATAGGCGCTGCAGTAGCTGGAGTTTTCGTAATCGTTTTGATTGCTGCGTTTTTTGTGTTTACAAGGAAGAAGAAAAGACGGACAGATTTGTACCCTGGCCCGTACTTGCCTCCCAATAACTTCGTTGTTAAATCAGATGGAAATTACTATCCGCATCAACATACGGGCAACTCTTCTGGTTCGGCAGAAGGCTTCTATACTCAGGTCCCGCATACTCCGGTTGGAAATAGCTTTGGGAGTCAAAGAGGAACGGGATACAGTGGCAGTGGCGGCGCCAGTGCAGCGGAGTCAGGTGTGATAAACAGTGCTAAATTCTTCTTTACCTATGAGGAATTGATGGAGGTTACGTCTGGATTTTCGCGTCAAAACATTCTTGGGGAAGGTGGGTTTGGATGTGTTTACCAGGGTTGGCTTCCAGAAGGGAAGACAGTGGCTGTCAAGCAACTCAAGGCAGGAAGTGGACAGGGCGAGAGGGAATTCAAGGCGGAAGTTGAGATTATCAGTCGTGTTCATCATCGGCATTTGGTGTCTTTGGTGGGCTACTGCGTCTCTGAGAATCATAGATTGCTCATCTATGAGTTTGTTCCTAACAAGACTCTTGAGTATCATCTCCATAGCGGTAATGAAGTGCCCGTGTTGGATTGGTGCAAAAGACTCAAAATCGCTTTAGGAGCTGCAAAGGGTTTGGCATATCTGCATGAAGATTGCCATCCCAGGATCATTCACAGAGATATCAAGTCAGCTAACATTTTGCTGGATGATGCTTTTGAGGCACAGGTTGCAGATTTTGGACTTGCAAAACTGACTAACGATACAAAAACCCACGTTTCGACTCGTGTCATGGGGACATTTGGATACATGGCACCTGAGTACGCATCAAGTGGGAAATTGACAGATAGATCAGATGTATTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATCACTGGTCGTAAGCCTGTTGATCCCACTCAGCCTTTGGGGGATGAGAGTTTGGTCGAATGGGCTCGTCCACTCCTTCTTCACGCCCTTGAAACTGGGGAGTTTGAAGTATTGATAGATCCACGCCTTGAAAAACGCTATGTGGAAAGTGAAATGTTCAGAATGATCGAAGCAGCAGCTGCCTGCGTTCGTCATTCGGCTCCCAAAAGGCCTCGCATGGTTCAGGTAGTGAGAGCACTAGACATTGAAGGCGACATTTCTGACCTCTCCAATGGTGTCAAATTTGGCCAGAGCACTATCTATGATTCTGGACAATACAGTCAAGACATTTCTAAGTTCAGGAGAATGGCATTCGGTGATAGCTCCGAGTACGACATTTACAGTAGCGAATACAATTCCAGAGACATGTCTGCAAGTCGTGAATCATGGAGATCAAATAACTCAAGTGGTGAATCAGAAACTCTAGCTTTTAAAGGACGAAGTGGTGTACAACAAAGTCACCGTACCAGTCGACAATTATAA | 2322 | 48.71 | MRSSSNDTSSPSSDSDSGADSSLPPEASDSSPPPPSQLDDFSTLSFDEGNEANEANGPEPSDLVSQFNAPPTESDGSPSSSPPSNPNPGSTPPAPIVSSNSSSSDENPSPPPEPSASPPPSPHPPPPPTRPPPTSPPPPELPSEFEVDPPPSPVPTQKNYPATPGSPPSPIPDNSPSVPTNNGSAPGPETDEELPPSEPTDPLSPTEAPTVVPSPGASPGTARRTPSPPEVLTTPTSGSNVLPPPTTTSSSRTPNNSPHSTDSTPVKSPSGKSHPPSSGSSSHTDAIIGAAVAGVFVIVLIAAFFVFTRKKKRRTDLYPGPYLPPNNFVVKSDGNYYPHQHTGNSSGSAEGFYTQVPHTPVGNSFGSQRGTGYSGSGGASAAESGVINSAKFFFTYEELMEVTSGFSRQNILGEGGFGCVYQGWLPEGKTVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVSENHRLLIYEFVPNKTLEYHLHSGNEVPVLDWCKRLKIALGAAKGLAYLHEDCHPRIIHRDIKSANILLDDAFEAQVADFGLAKLTNDTKTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPLLLHALETGEFEVLIDPRLEKRYVESEMFRMIEAAAACVRHSAPKRPRMVQVVRALDIEGDISDLSNGVKFGQSTIYDSGQYSQDISKFRRMAFGDSSEYDIYSSEYNSRDMSASRESWRSNNSSGESETLAFKGRSGVQQSHRTSRQL | 773 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1578282 | 1582295 | - | Maker00026017 | Lcy7g0178 | 637010 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy7g0178 | 773 | Gene3D | Transferase(Phosphotransferase) domain 1 | 482 | 690 | - | - | |
Lcy7g0178 | 773 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 244 | 716 | IPR047117 | - | |
Lcy7g0178 | 773 | MobiDBLite | consensus disorder prediction | 737 | 773 | - | - | |
Lcy7g0178 | 773 | SMART | serkin_6 | 406 | 680 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy7g0178 | 773 | CDD | STKc_IRAK | 412 | 681 | - | - | |
Lcy7g0178 | 773 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Lcy7g0178 | 773 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 527 | 539 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy7g0178 | 773 | FunFam | proline-rich receptor-like protein kinase PERK8 | 482 | 695 | - | - | |
Lcy7g0178 | 773 | ProSitePatterns | Protein kinases ATP-binding region signature. | 412 | 434 | IPR017441 | GO:0005524(InterPro) | |
Lcy7g0178 | 773 | ProSiteProfiles | Protein kinase domain profile. | 406 | 682 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy7g0178 | 773 | SUPERFAMILY | Protein kinase-like (PK-like) | 387 | 680 | IPR011009 | - | |
Lcy7g0178 | 773 | MobiDBLite | consensus disorder prediction | 33 | 50 | - | - | |
Lcy7g0178 | 773 | FunFam | Proline-rich receptor-like protein kinase PERK8 | 379 | 481 | - | - | |
Lcy7g0178 | 773 | MobiDBLite | consensus disorder prediction | 227 | 283 | - | - | |
Lcy7g0178 | 773 | Pfam | Protein tyrosine and serine/threonine kinase | 409 | 679 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy7g0178 | 773 | MobiDBLite | consensus disorder prediction | 59 | 80 | - | - | |
Lcy7g0178 | 773 | Gene3D | Phosphorylase Kinase; domain 1 | 376 | 481 | - | - | |
Lcy7g0178 | 773 | MobiDBLite | consensus disorder prediction | 1 | 283 | - | - | |
Lcy7g0178 | 773 | MobiDBLite | consensus disorder prediction | 107 | 175 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy6g0213 | Lcy-Chr6:1940605 | Lcy7g0178 | Lcy-Chr7:1578282 | 4.06E-80 | dispersed | |
Lcy7g0178 | Lcy-Chr7:1578282 | Lcy7g0396 | Lcy-Chr7:3370972 | 1.55E-156 | dispersed | |
Lcy7g0178 | Lcy-Chr7:1578282 | Lcy10g2106 | Lcy-Chr10:45109045 | 2.48E-160 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66062 | None | None | None | None | Lcy | PK |
Pathway information
