Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0196 ATGGCATCAAGATCCTCCACAAACCTTTTGGACCTGGCTTCTGGAGATTTACTGGATGTTCCTCGTACACCTAGGCCCCTGCCACGGGTAATGACTGTTCCTGGAATTATTTCTGAAATGGATGATTATGGGAGCAATGACGGAGATTCGGAGTCTTCATCTGTATACCGTGAGCGGAAAATCATAGTTGCAAATATGTTGCCCTTGCAAGCTAAAAGAGATGGGCAATCTGGCAAATGGTGCTTCAGTTTAGACGAGGATTCAATTTTATTGCAGTTAAAGAATGGGTTTGCACCTGAGATGGAGGTTATATACGTCGGTTCCCTCAAGGTTGAAATCGACGCCAGCGAACAGGAAGAGGTTGCTCAGAAGCTGTTCGACAATTTTAACTGTGTACCTACATTTCTACCTTATGATCTCCAGAAGAAATTTTATCTTGGGTTCTGCAAACAGCAGCTATGGCCCTTATTCCATTACATGCTACCCATGTGCCCAGAGCATGGCGATCGCTTCGATCGGCTGCTTTGGCAAGCCTATGTTTCTGCAAATAAAATATTTGCTGACAAGGTGATGGAAATCATCAATCCTGAAGAAGATTCTGTTTGGGTTCATGATTATCATTTAATGGTTCTTCCAACGTTTCTTAGGAAGCGCTACAATCGAGTTAAACTTGGATTTTTTCTGCATAGCCCGTTTCCGTCATCAGAAATCTATCGAACTTTACCAGTTCGGGATGAGATTCTCCGTGGCCTGCTAAATTGTGATTTAGTTGGTTTTCATACATTTGATTATGCTCGTCACTTCCTCTCATGCTGCAGCAGAATGTTGGGCCTGGACTACGAATCTAAGCGGGGACATATTGGACTAGATTATTTTGGCCGCACGGTATATATCAAAATTTTGCCTGTAGGTATTCACATGGGTCGGCTGGAATCAGTGATGAATCTTCCATCTACATCTGCTAAAGTCAGAGAAATTCGAGATCAGTTCATGGGGAAGAAATTAATCCTTGGTATTGATGACATGGACATATTTAAGGGCATAAGCCTGAAGCTTCTCGCTGTTGAACAGCTTTTACGGCAACATCCCGAGTTGCGAGGCAAAATAGTCCTTGTTCAAATAGTGAATCCTGCAAGGGGTTCAGGGAAAGATGTACATGAAGCTCAGAAGGAAACATACTTGGCTGCTGAAAGGATCAACGAAGCTTATGGTTCAAATAACTACAAACCAGTAATTCTGATTGATCGCCCTGTTCCACGTTTTGAGAAAACTGCTTATTATGCATTAGCAGAATGCTGCATAGTGAGTGCTGTAAGGGATGGTATGAATTTGGTTCCATACAAGTATATTGTTTGTAGGCAAGGAACTCCTCTTATGGATGAGGCTATGGGCTTACAAGTTGGTTCTCCTCGGACGAGTATGCTTGTAGTGTCCGAGTTTATTGGTTGTTCGCCTTCTTTAAGTGGAGCTATCAGGGTTAATCCTTGGGACATTGATGCTGTCGCCGATGCCTTGGAACTGGCCATAACCATGCAGGAGTCAGAGAAGCAGTTGCGGCATGAGAAACATTATCGATATGTCAGTTCCCATGATATAGGATATTGGTCTCGAAGTTTTATGCAGGACTTAGAGAGAGCATGTCAAGATCACTATAGTAAACGGTGCTGGGGAATTGGCTTGGGTCTTCGTTTTAGAGTTGTTTCTCTTTCTCCTGGGTTTAGGAAGTTAACAATTGATCACATTGTCTCAGCTTATAAGAGATCACATAGAAGGGCGATATTTTTGGATTACGATGGCACTATTATTTCACAAAGCTCTATAATTAAGACCCCGAGCCCGGAAGTTATCTCTGTCTTGACTACGCTTTGCAACGACCCCTGTAACACTGTGTTCATTGTTAGTGGGAGGGGGAGAGATTCATTAGGTCAGTGGTTTGCCTCTTGTGAGATGTTGGGAATTGCAGCAGAACACGGGTACTTCATAAGGTGGGGTGGAACTTCAGAATGGGAAACTAGTCCGTTGTCTTCTGATCTGGATTGGATTAAAATTGTAGAGCCAGTTATGAGACTATATACGGAAGCAACAGATGGGTCGTCCATAGAACCCAAAGAGAGCGCTTTAGTCTGGCATCATCAAGATGCCGATTCTGACTTCGGATCCTGTCAAGCTAAGGAATTGCTGGACCATCTAGAAAACGTACTTGCCAACGAACCAGCCGTTGTTAAAAGGGGCCAACATATTGTTGAAGTGAAGCCACAGGGAGTAAGCAAAGGGTTGGTCGCAGAAAAGGTTCTCTCGAGAATGGTAGATAGTGGAAGACCACCTGATTTCGTGATGTGCATTGGAGATGATAGATCAGATGAAGATATGTTTGAGAGCATATTAAGCACCGTCTCTAGTCCTTTACTGCCTTCCGCTCCAGAAATTTTTGCCTGCACTGTTGGGCGAAAGCCAAGCAAGGCGAAGTTTTACCTCGATGATACTTCTGACGTCGTGAAATTGCTGCAAGGCCTTGCCTCTTCGTCCCGTCCAAGACCTCGGCAACTACCACAAATGCGTGTTTCTTTTGAGAGTGTTTTTTGA 2583 43.75 MASRSSTNLLDLASGDLLDVPRTPRPLPRVMTVPGIISEMDDYGSNDGDSESSSVYRERKIIVANMLPLQAKRDGQSGKWCFSLDEDSILLQLKNGFAPEMEVIYVGSLKVEIDASEQEEVAQKLFDNFNCVPTFLPYDLQKKFYLGFCKQQLWPLFHYMLPMCPEHGDRFDRLLWQAYVSANKIFADKVMEIINPEEDSVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLVGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTVYIKILPVGIHMGRLESVMNLPSTSAKVREIRDQFMGKKLILGIDDMDIFKGISLKLLAVEQLLRQHPELRGKIVLVQIVNPARGSGKDVHEAQKETYLAAERINEAYGSNNYKPVILIDRPVPRFEKTAYYALAECCIVSAVRDGMNLVPYKYIVCRQGTPLMDEAMGLQVGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALELAITMQESEKQLRHEKHYRYVSSHDIGYWSRSFMQDLERACQDHYSKRCWGIGLGLRFRVVSLSPGFRKLTIDHIVSAYKRSHRRAIFLDYDGTIISQSSIIKTPSPEVISVLTTLCNDPCNTVFIVSGRGRDSLGQWFASCEMLGIAAEHGYFIRWGGTSEWETSPLSSDLDWIKIVEPVMRLYTEATDGSSIEPKESALVWHHQDADSDFGSCQAKELLDHLENVLANEPAVVKRGQHIVEVKPQGVSKGLVAEKVLSRMVDSGRPPDFVMCIGDDRSDEDMFESILSTVSSPLLPSAPEIFACTVGRKPSKAKFYLDDTSDVVKLLQGLASSSRPRPRQLPQMRVSFESVF 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1718723 1724472 + Maker00025869 Lcy7g0196 637028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0196 860 Pfam Trehalose-phosphatase 594 829 IPR003337 GO:0005992(InterPro)
Lcy7g0196 860 CDD GT20_TPS 59 544 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy7g0196 860 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 720 851 - -
Lcy7g0196 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 590 707 - -
Lcy7g0196 860 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy7g0196 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 548 - -
Lcy7g0196 860 Gene3D Glycogen Phosphorylase B; 312 528 - -
Lcy7g0196 860 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
Lcy7g0196 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 52 311 - -
Lcy7g0196 860 NCBIfam HAD-IIB family hydrolase 592 793 IPR006379 -
Lcy7g0196 860 SUPERFAMILY HAD-like 591 838 IPR036412 -
Lcy7g0196 860 NCBIfam trehalose-phosphatase 589 838 IPR003337 GO:0005992(InterPro)
Lcy7g0196 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 25 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Lcy7g0196 860 CDD HAD_TPP 592 833 - -
Lcy7g0196 860 Gene3D - 590 713 IPR023214 -
Lcy7g0196 860 Gene3D - 719 848 IPR023214 -
Lcy7g0196 860 Gene3D Glycogen Phosphorylase B; 52 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g2240 Lcy-Chr6:46976806 Lcy7g0196 Lcy-Chr7:1718723 0 dispersed
Lcy7g0196 Lcy-Chr7:1718723 Lcy7g1119 Lcy-Chr7:12420797 0 dispersed
Lcy2g0645 Lcy-Chr2:5493497 Lcy7g0196 Lcy-Chr7:1718723 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0196 K16055 - csv:101212688 1682.92