Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0207 ATGTCCGTATCGATTTCCAACTGCTTCTCTGATTTACTCTGCCAGGAGGATTCCTCCGGCGTCTTGTCCGGCGAGTCGCCGGGATGTTCTTCCGACCTCGATTCTCCGGCCTGCATCGAGGAATCTATCGCCGTCTTCATCAAGGACGAGCGTCACTTCGTCCCCGATTACGACTGTTTGTCGCGCTTCCAATCTCCGTCGCTCGACGCGGCCGCTAGATTAGACTCTGTTGCATGGATTCTTAAGGTTCAAGCCTATTACGGTTTTCAGCCGTTGACGGCGTATCTCTCCGTCAACTACTTGGATCGATTCCTTTGTTCACGCCGTTTGCCGCAAACAAATGGGTGGCCTTTGCAACTCCTCTCTGTTGCTTGCCTCTCACTGGCTGCTAAAATGGAGGAACCTCTTGTTCCCGCTTTACTGGATCTTCAGGTTGAGGGGGCTAAATATATATTTGAACCCAGAACAATATGCAGGATGGAACTGTTGGTGCTGAGAGTATTGGATTGGCGGTTGCGTTCTGTAACGCCGTTCAATTTCATCGCATTCTTTGCTTGCAAGCTCGATCCATCGGGAGATTTCATCGGGTTTCTTATCTCAAGAGCAACAGAAATTATACTATCAAATATCCGAGAGGTAATCTTTCTGGAGTACTGGCCATCGTGTATTGCGGCGGCCGCCTTGCTTTGTGCAGCAAATGAAGTCCCGAATTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAGTGGTCTAAGGAAAGAAAATATCATCGGCTGCTACCGGTTAATGCAAGAGATTGTGCTTGATAGTAGCCAGAGCAAGTCCCCAAAAATCTTACCTCAGTTTAGAGTGACAGTCCGCACTAGAATGAGATCCAGCGACTTATCCTCCTCCTACTCCTCCTCCTCTTCCTCCTCTTCGTCATCACCAAACAAAAGGAGAAAATTAAACCAGAGCCACTGGGTAGATGATGACAAAGGTAACACCGAAGAATGA 1002 48.3 MSVSISNCFSDLLCQEDSSGVLSGESPGCSSDLDSPACIEESIAVFIKDERHFVPDYDCLSRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFIGFLISRATEIILSNIREVIFLEYWPSCIAAAALLCAANEVPNLSVVNPEHAESWCSGLRKENIIGCYRLMQEIVLDSSQSKSPKILPQFRVTVRTRMRSSDLSSSYSSSSSSSSSSPNKRRKLNQSHWVDDDKGNTEE 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1819009 1822887 - Maker00026143 Lcy7g0207 637039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0207 333 SMART cyclin_7 78 166 IPR013763 -
Lcy7g0207 333 CDD CYCLIN_AtCycD-like_rpt1 72 170 - -
Lcy7g0207 333 Pfam Cyclin, C-terminal domain 175 287 IPR004367 -
Lcy7g0207 333 PANTHER CYCLINS 42 274 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lcy7g0207 333 SUPERFAMILY Cyclin-like 35 172 IPR036915 -
Lcy7g0207 333 Pfam Cyclin, N-terminal domain 43 173 IPR006671 -
Lcy7g0207 333 MobiDBLite consensus disorder prediction 292 333 - -
Lcy7g0207 333 MobiDBLite consensus disorder prediction 318 333 - -
Lcy7g0207 333 Gene3D - 56 173 - -
Lcy7g0207 333 SUPERFAMILY Cyclin-like 157 279 IPR036915 -
Lcy7g0207 333 ProSitePatterns Cyclins signature. 73 104 IPR048258 -
Lcy7g0207 333 SMART Cyclin_C_2 175 312 IPR004367 -
Lcy7g0207 333 Gene3D - 47 236 - -
Lcy7g0207 333 MobiDBLite consensus disorder prediction 292 317 - -
Lcy7g0207 333 FunFam D2/4-type cyclin 56 173 - -
Lcy7g0207 333 CDD CYCLIN_AtCycD-like_rpt2 175 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2314 Lcy-Chr13:42014610 Lcy7g0207 Lcy-Chr7:1819009 4.06E-129 dispersed
Lcy1g1466 Lcy-Chr1:14226228 Lcy7g0207 Lcy-Chr7:1819009 3.19E-26 dispersed
Lcy4g0223 Lcy-Chr4:2764751 Lcy7g0207 Lcy-Chr7:1819009 2.02E-36 dispersed
Lcy6g0441 Lcy-Chr6:4117844 Lcy7g0207 Lcy-Chr7:1819009 4.77E-63 dispersed
Lcy6g0505 Lcy-Chr6:4727139 Lcy7g0207 Lcy-Chr7:1819009 3.44E-38 dispersed
Lcy7g0207 Lcy-Chr7:1819009 Lcy9g2038 Lcy-Chr9:45254970 1.61E-44 dispersed
Lcy7g0207 Lcy-Chr7:1819009 Lcy13g1500 Lcy-Chr13:33656000 1.24E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0207 K18810 - csv:101209417 586.645