Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0216 ATGGCTCGAACCCCTGTTTTCTCCCGCCGCCGGAGGTCCGATCAGATCGACGCCTTAGATCGCTTCCCCACCTCTGATTCCGAGGTCCACGTCCTCGCCGTCGACGACAGCCTCGTCGACCGTACGGTAATCGAACGTCTCCTCCGGCTCACCGCCTGCCGAGTGGATAGTGGAATTAGAGCTCTACAGTATCTCGGATTGCAAGATGAGACCAATTCCCAAGTTGGTTTTGATGGCTTGAAGGTTGATATGATCATTACCGACTACTGCATGCCCGGAATGACAGGCTACGAATTGCTCAAGAAAATTAAGGAATCTTCAACTCTGAGAGAGATTCCGGTGGTGATTATGTCGTCGGAGAACGTGGTGGCGAGGATAGACAGATGTTTAGAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAATTATCAGATGTGAAACGGCTCAGGGAATATATGGTTGGGGACGAAAAGACTGGAAGTGAAAGAAGTGGGATCAACAAAAGGAAGCTACGAGAGCCGTGTGATCAACCCTCATCGTCACCGTCCATTTCATCCCCAGCATCGTCCGATTCCACTCCATCCTGCCCATCATCTTCATCACCGTCAGATTCGCTTCAATCCACACCATCATCATCAGAACCATCTTCTCCGACGTCCACTTCTCAATCGGACGGCTCTAAATGA 690 50.87 MARTPVFSRRRRSDQIDALDRFPTSDSEVHVLAVDDSLVDRTVIERLLRLTACRVDSGIRALQYLGLQDETNSQVGFDGLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMVGDEKTGSERSGINKRKLREPCDQPSSSPSISSPASSDSTPSCPSSSSPSDSLQSTPSSSEPSSPTSTSQSDGSK 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1896514 1898414 + Maker00025818 Lcy7g0216 637048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0216 229 Pfam Response regulator receiver domain 31 147 IPR001789 GO:0000160(InterPro)
Lcy7g0216 229 SUPERFAMILY CheY-like 29 151 IPR011006 -
Lcy7g0216 229 Gene3D - 29 184 - -
Lcy7g0216 229 CDD REC_typeA_ARR 31 150 - -
Lcy7g0216 229 MobiDBLite consensus disorder prediction 177 229 - -
Lcy7g0216 229 PANTHER TWO-COMPONENT RESPONSE REGULATOR 27 218 IPR045279 GO:0009736(InterPro)
Lcy7g0216 229 ProSiteProfiles Response regulatory domain profile. 30 155 IPR001789 GO:0000160(InterPro)
Lcy7g0216 229 MobiDBLite consensus disorder prediction 158 229 - -
Lcy7g0216 229 SMART REC_2 29 151 IPR001789 GO:0000160(InterPro)
Lcy7g0216 229 MobiDBLite consensus disorder prediction 158 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0216 Lcy-Chr7:1896514 Lcy7g0695 Lcy-Chr7:6447304 3.87E-42 dispersed
Lcy2g0621 Lcy-Chr2:5307640 Lcy7g0216 Lcy-Chr7:1896514 3.52E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20364 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0216 K14492 - csv:101209506 335.495