Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0228 ATGAGTGGATGGGATAGGGTTAGACCATCAACTTCGAGATTTGGCCGCGGCAATTCTGCAATGCCCGAGAGGACCTCCTCCACTACTACTACGGTTCGACTCGGCCGAGTCCAGCCGCAGGCCCCCGGACATCGCACCATCTTCTGCAATGATCGCGACGCTAATCTCCTTGTCAAATTCAAGGGGAATTCAGTTTCGACGACTAAGTATAACTTCTTCACCTTCTTTCCGAAAGGGTTGTTTGAACAGTTCAGGCGTGTGGCTAACCTATACTTTCTTACAATCTCAATCTTATCCACCACACCCATCAGTCCTGTGCATCCAATTACAAATGTGGTCCCTTTAAGTCTGGTTCTACTCGTCTCTCTCATTAAAGAAGCATTTGAGGACTGGAAACGATTCCAGAATGATATGGCAATTAATAATAATCTTGTAGATGTGCTGCAAGATCAAAAGTGGGAGAGCGTACCTTGGAAAAGGTTGCAGGTTGGAGACATTGTTAGGGTTCGGCAGGATGGGTTTTTTCCTGCGGATCTTCTTTTCCTTGCTAGTACAAATCCAGATGGTGTCTGCTACATTGAGACTGCTAACCTGGACGGGGAGACAAATTTAAAGATTAGAAAGGCCCTGGAAAAAACCTGGGATTACCTGACTCCAGAGAAGGCATCTGAATTTAAAGGTGAAGTACAATGCGAGCAACCAAACAATTCACTCTACACTTTCACCGGCAATGTTATTATTCAAAAGCAAACATTACCTCTCAGCCCAAACCAACTTTTATTGCGAGGGTGCAGTCTCAGGAACACGGAGTATATTGTTGGGGCTGTTATTTTTACAGGCCATGAAACAAAGGTTATGATGAATGCTATGAATGTTCCCTCCAAAAGAAGTACTCTGGAGAAAAAACTTGACAAACTTATACTTACACTTTTTGCTACTCTCTTTATCATGTGTTTGATTGGAGCCATTGGCAGTGGAGTTTTTGTAAACGAAAAGTACTACTACTTAGCTCTTGATAAGGGAGGGGAAAACCAATTTAACCCGCGCAACCGATTCCTGGTTGTCATTCTGACCATGTTTACCCTGATTACTCTGTATTCGACAATCATTCCTATTTCTCTTTATGTTTCCATTGAGATGATCAAATTTATTCAATCGACACAATATATCAATAAGGATCTAAATATGTTCCATGCTGAAAGCAATACCCCAGCGTTGGCTAGAACTTCCAATTTGAACGAAGAACTGGGACAGGTAGAGTACATCTTTTCAGATAAAACTGGTACTCTTACCAGGAATCTAATGGAGTTCTTTAAGTGTTCCATTGGTGGAGAGATTTATGGCACTGGTATCACTGAAATAGAGAGGGGAATTGCTGAGCAGAATGGCTTGAAAGTGGACGAGGAGCACAAATCAACCAATGCTGTACAAGAAAAGGGATTTAATTTTGATGATGCTAGGCTTATGAGAGGAGCATGGAGAAATGAGCCCAACTCTGATCTTTGTAAGGAATTTTTTAGATGCCTTGCTATTTGCCATACCGTACTCCCTGAGGGCGATGAATCCCCAGAAAAGATCACATATCAAGCAGCATCACCTGATGAGGCTGCCTTGGTAACTGCTGCTAAAAACTTTGGCTTCTTCTTTTACAGGCGTACACCTACTACAATATATGTTCGTGAATCTCATGTTGAGAAGATGGGTAAAATCCTAGATGTTTCTTATGAAATTCTCAATGTACTTGAGTTCAATAGTGTAAGGAAGCGTCAGTCTGTCGTGTGTCGTTATTCCGATGGTAGACTTGTCTTGTACTGCAAGGGCGCTGATACCGTAATATATGAGAGATTGGCTGGTGGAAATGACGATCTGAAGAATGTAACTAGGGAACACTTGGAGAAATTTGGATCTTCTGGTTTGAGAACCCTATGCCTTGCTTATAGAGATTTGCATCCTGACGTTTATGAAAGCTGGAATGAGAAATTCATTCAAGCTAAGTCTTCATTGAGAGATCGTGAAAAGAAATTGGATGAGGTTGCAGAACTTATAGAGAAAGATCTTATTTTGATTGGCTGTACTGCTATAGAAGATAAGCTTCAAGAAGGAGTACCAAACTGTATACAGACACTTTCTAGAGCTGGTATCAAGATTTGGGTGCTGACAGGAGACAAGATGGAAACTGCTATTAATATAGCTTATGCTTGCAATTTAATAAACAATGATATGAAACAATTTATTATCAGTTCAGAAACAGATGCAATCAGAGAAGTTGAAAACAGGGGTGACCAAGTAGAACTTGCACGTTTTATTAGAGAAGAAGTAAAAAAGGAATTGAAGAAATGTCTTGAGGAAGCGCAGCAGTGTTTACAATCTGTGTCTCCACCAAAATTAGCACTTGTTATAGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTCTACGAGTTACTTTACTAAATTTGAGCTTGAATTGTAGTTCAGTTGTTTGCTGCCGGGTTTCTCCATTGCAGAAAGCGCAGGTGACAAGTTTGGTAAAGAAAGGTGCACAGAAAATAACACTTAGTATTGGTGATGGTGCTAATGATGTTAGCATGATTCAAGCAGCTCATGTGGGCATTGGAATAAGTGGGCAGGAGGGAATGCAAGCAGTGATGGCTAGTGATTTTGCTATTGCCCAGTTTCGCTTTCTCACAGATTTACTTCTTGTGCATGGGCGATGGTCATATCTTAGAATATGCAAGGTTGTCACATACTTCTTTTACAAGAATCTTACGTTCACTTTAACGCAGTTTTGGTTCACCTTTCAAACTGGATTTTCTGGTCAAAGATTCTATGATGATTGGTTCCAGTCATTATATAATGTCATATTTACCGCCCTACCTGTAATAATTGTCGGACTATTTGACAAGGATGTCAGTGCTTTCCTATCCAAAAAGTACCCTGAGCTCTATAGAGAGGGAATAAGAAATGTGTTTTTCAAGTGGAGAGTTGTGACAACTTGGGCTTTCTTTTCCATCTACCAATCTTTAGTCTTCTATTATTTTGTAACCGTTTCCAGTTCCAGCAGTCAATCGTCATCTGGCAAGGTCTTTGGCCTGTGGGATATTAGCACGATGACTTTCACGTGCATTGTGGTGACTGTGAATTTGCGGCTGCTTATGATCTGCAATTCAATTACCAGGTGGCATTATATTACAGTTGGGGGAAGCATTTTAGCATGGTTCCTATTTATTTTCTTATATTCTGGTATTATGACACCGCATGATAGGCAGGAAAATGTATATTTCGTCATTTATGTCTTAATGAGTACATTATACTTTTACGTAGCTGTCCTCCTTGTACCCGTTGTTGCACTTCTTTGTGATTTCGCTTACCAAGGCATTCAGAGATGGTTTTTCCCCTACGATTATCAGATAGTTCAAGAAATTCATAGACATGAACCTGAAGGTAGAAGAACGTCAGGATTTCTGGAGATTCAGAACCATCTTACACCGGAAGAGGCAAGAAGCTATGCCATGTCTCAACTCCCACGAGAGTTATCAAAGCACACTGGCTTTGCTTTCGACTCACCGGGCTACGAGTCATTTTTTGCTGCACAGCTTGGTATTTATGCCCCACAGAAGGCATGGGATGTTGCCAGGAGAGCCAGTGTGAAGTCGAGACCTAAGATTAGGGAAAAGAAATGA 3684 40.93 MSGWDRVRPSTSRFGRGNSAMPERTSSTTTTVRLGRVQPQAPGHRTIFCNDRDANLLVKFKGNSVSTTKYNFFTFFPKGLFEQFRRVANLYFLTISILSTTPISPVHPITNVVPLSLVLLVSLIKEAFEDWKRFQNDMAINNNLVDVLQDQKWESVPWKRLQVGDIVRVRQDGFFPADLLFLASTNPDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEVQCEQPNNSLYTFTGNVIIQKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKVMMNAMNVPSKRSTLEKKLDKLILTLFATLFIMCLIGAIGSGVFVNEKYYYLALDKGGENQFNPRNRFLVVILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQYINKDLNMFHAESNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEIYGTGITEIERGIAEQNGLKVDEEHKSTNAVQEKGFNFDDARLMRGAWRNEPNSDLCKEFFRCLAICHTVLPEGDESPEKITYQAASPDEAALVTAAKNFGFFFYRRTPTTIYVRESHVEKMGKILDVSYEILNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVIYERLAGGNDDLKNVTREHLEKFGSSGLRTLCLAYRDLHPDVYESWNEKFIQAKSSLRDREKKLDEVAELIEKDLILIGCTAIEDKLQEGVPNCIQTLSRAGIKIWVLTGDKMETAINIAYACNLINNDMKQFIISSETDAIREVENRGDQVELARFIREEVKKELKKCLEEAQQCLQSVSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCSSVVCCRVSPLQKAQVTSLVKKGAQKITLSIGDGANDVSMIQAAHVGIGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSAFLSKKYPELYREGIRNVFFKWRVVTTWAFFSIYQSLVFYYFVTVSSSSSQSSSGKVFGLWDISTMTFTCIVVTVNLRLLMICNSITRWHYITVGGSILAWFLFIFLYSGIMTPHDRQENVYFVIYVLMSTLYFYVAVLLVPVVALLCDFAYQGIQRWFFPYDYQIVQEIHRHEPEGRRTSGFLEIQNHLTPEEARSYAMSQLPRELSKHTGFAFDSPGYESFFAAQLGIYAPQKAWDVARRASVKSRPKIREKK 1227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1985149 2001324 - Maker00025885 Lcy7g0228 637060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0228 1227 SFLD C1.7: P-type atpase like 405 906 - -
Lcy7g0228 1227 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 31 1146 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0048194(PANTHER)|GO:0140326(PANTHER)
Lcy7g0228 1227 FunFam Phospholipid-transporting ATPase 688 895 - -
Lcy7g0228 1227 Pfam Phospholipid-translocating ATPase N-terminal 47 111 IPR032631 -
Lcy7g0228 1227 FunFam Phospholipid-transporting ATPase 532 687 - -
Lcy7g0228 1227 SUPERFAMILY HAD-like 411 898 IPR036412 -
Lcy7g0228 1227 SUPERFAMILY Calcium ATPase, transduction domain A 142 286 IPR008250 -
Lcy7g0228 1227 SFLD p-type atpase 405 906 IPR044492 -
Lcy7g0228 1227 PRINTS P-type cation-transporting ATPase superfamily signature 855 874 - -
Lcy7g0228 1227 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
Lcy7g0228 1227 FunFam Phospholipid-transporting ATPase 121 290 - -
Lcy7g0228 1227 CDD P-type_ATPase_APLT_Dnf-like 62 1015 - -
Lcy7g0228 1227 NCBIfam HAD-IC family P-type ATPase 828 934 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy7g0228 1227 Gene3D - 689 895 IPR023214 -
Lcy7g0228 1227 MobiDBLite consensus disorder prediction 12 31 - -
Lcy7g0228 1227 Pfam E1-E2 ATPase 144 323 - -
Lcy7g0228 1227 Gene3D - 125 290 - -
Lcy7g0228 1227 Coils Coil 770 790 - -
Lcy7g0228 1227 MobiDBLite consensus disorder prediction 1 31 - -
Lcy7g0228 1227 SUPERFAMILY Calcium ATPase, transmembrane domain M 55 1133 IPR023298 -
Lcy7g0228 1227 NCBIfam phospholipid-translocating P-type ATPase 60 1141 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Lcy7g0228 1227 FunFam Phospholipid-transporting ATPase IC 420 432 - -
Lcy7g0228 1227 Pfam Cation transport ATPase (P-type) 519 616 - -
Lcy7g0228 1227 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 488 694 IPR023299 GO:0000166(InterPro)
Lcy7g0228 1227 Gene3D - 535 688 IPR023299 GO:0000166(InterPro)
Lcy7g0228 1227 ProSitePatterns E1-E2 ATPases phosphorylation site. 425 431 IPR018303 -
Lcy7g0228 1227 Pfam Phospholipid-translocating P-type ATPase C-terminal 883 1133 IPR032630 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1623 Lcy-Chr1:16568295 Lcy7g0228 Lcy-Chr7:1985149 5.46E-217 dispersed
Lcy7g0228 Lcy-Chr7:1985149 Lcy7g0397 Lcy-Chr7:3379038 0 dispersed
Lcy7g0228 Lcy-Chr7:1985149 Lcy5g2449 Lcy-Chr5:47270391 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0228 K14802 - csv:101207069 2318.5