Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g0233 ATGGCAACAGAGGACGTGAAGCTTCTGGGTGCGTGGGCTAGTCCATTTGTGATCAGGGTCAGAATCGCCCTCAACATCAAATCTCTAAACTATGAATTTCTTCAGGAAACGCTCGGATCCAAGAGCCAACTCCTCCTCGAATCCAACCCTGTTCACAAGAAAATCCCTGTTCTCATTCACCAAAATAAGCCCATCGCCGAATCCTTGATCATCGTTCAGTATATTGACGAAGTCTGGTCCTCTGCTCCTTCCATCCTTCCCTCCGATCCTTACGATCGCGCCATGGCTCGATTTTGGGCTGCCTTTGCCGACGACAAGTTTTTCCCACCGATGCGGGCGACGATGGGCGCAGAAGAGGAAGTGAAAAGGGGGCTCATCGATCAAGTGGTGGAAGCGATCGGTTTATTGGAAGAAGCTTTTGGGAAGCTGAGCAGAGGAAAGGCATTCTTCAATGGAGACAGTATTGGGTTTCTTGACATTGCTTTTGGGTCGTTTTTAGGATGGCTCAGGGTGACTGAAGTATCGAATGGCGTGAAACTGATCGACGGAGAGAAGACTCCAGGGCTGGCCGGATGGGCTGAGAAGTTCTGTGCAGATGGCGCTGTGAAAGATGTGATGCCCGAAACTGAAAAGCTTCTGGAGTTTGCTAAGGTTATTGAAGCCAAAATGAAGGGAGAACATCCAAAATAA 690 49.13 MATEDVKLLGAWASPFVIRVRIALNIKSLNYEFLQETLGSKSQLLLESNPVHKKIPVLIHQNKPIAESLIIVQYIDEVWSSAPSILPSDPYDRAMARFWAAFADDKFFPPMRATMGAEEEVKRGLIDQVVEAIGLLEEAFGKLSRGKAFFNGDSIGFLDIAFGSFLGWLRVTEVSNGVKLIDGEKTPGLAGWAEKFCADGAVKDVMPETEKLLEFAKVIEAKMKGEHPK 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2040262 2041265 + Maker00025817 Lcy7g0233 637065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g0233 229 SFLD Main.3: Omega- and Tau-like 2 225 IPR045073 -
Lcy7g0233 229 SUPERFAMILY Thioredoxin-like 5 108 IPR036249 -
Lcy7g0233 229 SFLD Glutathione Transferase (cytosolic) 2 225 IPR040079 -
Lcy7g0233 229 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 215 IPR010987 -
Lcy7g0233 229 SUPERFAMILY GST C-terminal domain-like 77 220 IPR036282 -
Lcy7g0233 229 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 217 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Lcy7g0233 229 CDD GST_C_Tau 90 219 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Lcy7g0233 229 Gene3D Glutaredoxin 1 85 - -
Lcy7g0233 229 FunFam Glutathione S-transferase GSTU6 1 86 - -
Lcy7g0233 229 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Lcy7g0233 229 CDD GST_N_Tau 6 79 - -
Lcy7g0233 229 Pfam Glutathione S-transferase, C-terminal domain 122 194 - -
Lcy7g0233 229 FunFam Glutathione S-transferase U9 86 226 - -
Lcy7g0233 229 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
Lcy7g0233 229 Gene3D - 86 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0402 Lcy-Chr2:3373657 Lcy7g0233 Lcy-Chr7:2040262 2.08E-55 dispersed
Lcy6g0691 Lcy-Chr6:6703209 Lcy7g0233 Lcy-Chr7:2040262 7.34E-50 dispersed
Lcy6g0692 Lcy-Chr6:6708281 Lcy7g0233 Lcy-Chr7:2040262 9.57E-44 dispersed
Lcy7g0233 Lcy-Chr7:2040262 Lcy8g0116 Lcy-Chr8:2716886 4.97E-08 dispersed
Lcy7g0233 Lcy-Chr7:2040262 Lcy7g0278 Lcy-Chr7:2422927 6.62E-51 transposed
Lcy7g0233 Lcy-Chr7:2040262 Lcy5g2548 Lcy-Chr5:48246151 4.54E-51 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g0233 K00799 - vvi:100245065 324.709